/usr/share/EMBOSS/test/data/feat.gbft is in emboss-test 6.6.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 | FEATURES Location/Qualifiers
source 1..32987
/db_xref="taxon:77818"
/focus
/mol_type="genomic DNA"
/organism="Wolbachia sp. wKue"
CDS <1..2169
/codon_start=1
/db_xref="SPTREMBL:Q9JMP0"
/transl_table=11
/gene="gp1"
/product="hypothetical protein"
/protein_id="BAA89627.1"
/translation="HYYFSRDILGQSILINKIGQDQSNIKKYIYSYGEYPLNWPQGTEY
TLSNSPVTTLIFVQGNEGQEKTAFIFHIRESNTKEFYADKKIPVLNIPKIGKVGNAVEI
KMSLKKYETGLSFEDLFEIEQISKYESSGNDQQFTDGKFIEIPNSDELKAKFDQAITSQ
HASDGEVSLQAYKVLLTEVADTIYPIKDLITNEARLQAVLNGLLSSYSDLKLQETSAKT
VIIPEFQVGAGGRVDMVIQGIGPSSQGTKEYTPIALEFKLINKNLDEEGMKKEVDKLTK
EQNIRYAKGAALKAITDSDKMLFMGVVVNVKAKDKNSLILTSDKFVPALVVHSSIHMIH
PDTVAQSLGKLNLNDCVGHSSRSKRSNNDCLFSKGDVEEFSKGKVDENNVDKVIIDSEK
FLTYVKSSQDKGKNAQLVEFIGNKNIEGDYKYLVDKVIGDQGYERYIQNERIKDLQSDV
LQQNSGLTKNPKLKSRLMNAAGRIQLIRGIHGAIVSCTDGTATDCGLNLGGIGWSFASQ
PIGNAMVRITPKVVASTGNIVGKIIPGTLGRQTKFAIELAGVKFGSTLAKGAAGAVAGA
FDIIFIGISANNLIDCKNRENSDNPCGEKEIRDNIATISFSGVSFVSGIALTAASMPVV
GIAVGFGLMVGQGVYSGISNIVEYEKKYDTTYGENWSIFWRTILFQDMASDVQHLADRK
NTVDSLAKEVWEALNNASKKLFLLVALF"
CDS complement(1548..1895)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN9"
/transl_table=11
/gene="gp2"
/protein_id="BAA89628.1"
/translation="MLAAVRAIPETNDTPEKDIVAILSLISFSPHGLSLFSLFLQSIRL
FADMPIKIISNAPATAPAAPFASVLPNFTPANSIANFVCLPKVPGIIFPTMFPVDATTF
GVILTIAFPIG"
CDS complement(2135..3481)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN8"
/note="similar to hypothetical protein Rv2424c of
Mycobacterium tuberculosis"
/transl_table=11
/gene="gp3"
/protein_id="BAA89629.1"
/translation="MIKAKSKLEIVNPDTAGIDIGSAVHYVCVPEGRDEQRVKKFGCFT
VDLHNLAGWLKKCKVRTVAMESTGVYWIPLFQILESYGFEVKLVNARYIKNVPGRKSDV
QDCQWLQQLHSYGLLHGSFRPDDQMCVLRNYVRQRSNLIESASTHILRMQKALIQMNVQ
LHKVISDITGVTGMQIIKAIIEGERNPEKLSELRDVRIRNDRSTMAKALKGDYRKELLF
VLKQEFELYNIYQEKIAECDKSIEQYYKTFETKSDENKRCSKIKNRFSKNRPDFPLHEE
LYRVTGIDFTKVPGLDVLTIQTIISEVGLNHDKWPSEKHFTSWLGLSPANKVTGEKVFG
TRTRKVIARAANAFRMAAQCVSRSNSGIGAYCRRLKKRLGAPKAITATARKLACIFYSM
LKYGQEYVEKGIDYYEKLYKEKIVKTLSKKASEFGYVLIKKELLAERVS"
CDS 2298..2738
/codon_start=1
/db_xref="SPTREMBL:Q9JMN7"
/transl_table=11
/gene="gp4"
/product="hypothetical protein"
/protein_id="BAA89630.1"
/translation="MHANFLAVAVIAFGAPSRFFNLLQYAPIPLLLLDTHWAAILKAFA
ARAITLRVLVPNTFSPVTLLAGLSPNQEVKCFSDGHLSWFKPTSEIIVCIVSTSSPGTL
VKSIPVTLYSSSCKGKSGLFFENLFFILLHRLFSSDFVSNVL"
source (3481.3740)..(29173.29458)
/db_xref="taxon:112596"
/note="putative"
/organism="bacteriophage WO"
CDS 3741..5453
/codon_start=1
/db_xref="SPTREMBL:Q9JMN6"
/note="similar to RepA of plasmid RSF1010"
/transl_table=11
/gene="gp5"
/protein_id="BAA89631.1"
/translation="MFDAPKGKKQYKPFDVKQSRYGAPKVRPLYNIPSILKSDKVVLVE
GEKCAEALIEQGITATTAMSGANAPIDKTDWSPLKGKHIIIWPDNDEAGNKYAKNAEKK
LLEIGVASLAVLEIPRGKPEKWDAADCVEEGIDVKEFLASTPLLTIDTPATDTSNMKSL
ERSTKQPLNILDWSAERFVGPVPEQKFLVEGLFPLGVTSIIAAMGDTGKGMLLLDLALK
VASDKDQMCGFGSLVTEHGSVVIFSAEDDASEIHRRLERLDPKCERLKHKDKLFIVPLP
NVRGSLTILRNVRGKIVEVSPEFESVMKQLEEIKDLKLIVFDPLASFIHADINADPAVG
DYLMCLLSDLACSTGASIITAHHMRKPKGEKPILTAEQARDAIRGTSALVNGVRCSYAF
WPIENTARLEIFKAVGETPRQNALFHGAVVKANGLADRTVRTYLRNQETGLLEDITIQL
TVKNASEKDLKICLTDAITRSAVAGHPFTHTGSTGVYKQRHRLPEIFHSMGRDRLERIV
QELLQAKQLVKGMSTGAKEDKWLDIPTGPFACGIGKFTLGAEDFSYRQNLMLG"
CDS complement(3827..4375)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN5"
/transl_table=11
/gene="gp6"
/product="hypothetical protein"
/protein_id="BAA89632.1"
/translation="MPVSPIAAIIEVTPKGNRPSTRNFCSGTGPTKRSALQSKMLSGCF
VDLSKLFIFEVSVAGVSIVSNGVEAKNSLTSIPSSTQSAASHFSGLPRGISSTASDATP
ISKSFFSAFFAYLLPASSLSGQMIICLPLSGDQSVLSIGAFAPDIAVVAVIPCSISASA
HFSPSTRTTLSDFKILGML"
CDS complement(5568..5921)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN4"
/transl_table=11
/gene="gp7"
/product="hypothetical protein"
/protein_id="BAA89633.1"
/translation="MYFSLNVNILIIFCGSLSGLLSFCCLSYCTLFVFYYYFILSIIIY
YYYIYIIYKGFRNAESAILADFRHIITRNTFRNRGQKVRIQAIFSFLVSHYLFSNQGIR
NIIQPFDVLSLFN"
CDS complement(6578..7597)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN3"
/note="similar to RhuM of Salmonella typhimurium"
/transl_table=11
/gene="gp8"
/protein_id="BAA89634.1"
/translation="MDENKIVFYTTPGGNIEIEVLCRDENLWLTQKRMAELFDVQLPAI
SKHIKNIFESGELQEKEVVSTFEVTAADGKNYPTQFYNVDTIIAVGYRVNSKKATSFRV
WATKVLRDFIIKGFALNSERLKNGPKFGKDYFNELLEKIREIRASERRFYQKITDIYAE
CSADYDPHSDITRQFYAKVQNKLYWAIYGLTAAELICSRVDHEKPHMGLTTWKDGSGNK
IHKSDVSTAKNYLTEKELSELNHIVSMYLDYAELQARKHRLMKMQNWVEKLDAFLLFND
YEVLKDAGKVSAEVAKALAEGEYEKYRVIQDKLHESDFDELIKASKESEKITTTKTSL"
CDS complement(8167..9273)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN2"
/transl_table=11
/gene="gp9"
/product="hypothetical protein"
/protein_id="BAA89635.1"
/translation="MVLQSCQEQISDLLNSGSSWVNPNQNYIEAARYLSNLELIKMQER
SYIICSRRQDKLDWPNIVDPYCNNEIFIDEDFNEACDNIICENCNRDILPNTYKKQRFH
RLSVYFNPEKFMNWFEGQLSDTNFMWQKVESGVYHVGGQGKIVSLIILDFCTNPTFLTI
DKLKANPTVLIILRKNPSNIPLDLPIVKMVDLFFQHKTLIEVFQEAAQRGVLEFIPNTS
MQILHTALNLIEPSKEKELLKLQLIEGSLYVNNIEILNKKAVACMKVLRVLFEQFLNDC
KKELPPEKHMLLRITEIEKRLNLDPEADPEHHIRKPLNTIQRTIKTTLAKKLGLNIERN
DVIQTVGWPGSSRRDYGYRINPFTVVVR"
CDS complement(9239..10471)
/codon_start=1
/db_xref="SPTREMBL:Q9JMN1"
/transl_table=11
/gene="gp10"
/product="hypothetical protein"
/protein_id="BAA89636.1"
/translation="MNIYPNRKFWEDDLEVPVNHLLDRFHNTKIRQSWIDSLSGKQLNI
IFQNSFKDKLNAQLFDDESYDNTSVQYKRKVIANYSDSLVTYYLITCFDRAKLEVTVSE
IARSALTTELMKSYLVKNNNKYDKKSLLFLLFHADYNLLKSVYHFEKIQRKSFMSFALQ
KIPRRPSTPFKDFISEEIIQQILKEDNIKRNDSFENQLQGFFYHQNRLYVLIRKASDID
LLLNSNKVIHGHKAEWMILDFLLNGTQVDLGARNIDQAIEIANSIASCYFGCECIFVDV
QDKNFAEQVHKFIETCINESDSNIRVFELKFQSNRFNYSYTNITLTVAPYDPIAPELHV
LKPFVGDIVPLIESIKVIFQGKKIGLFFKRSDEYIAIYYSEHPLNKREREDFKAYIKQF
YGLTILPRANL"
CDS 10689..11144
/codon_start=1
/db_xref="SPTREMBL:Q9JMN0"
/transl_table=11
/gene="gp11"
/product="hypothetical protein"
/protein_id="BAA89637.1"
/translation="MSILTLDLGKQTGWAILTNGVIKSGSKSFHGSRFSGGGMCFLNFR
NWLNSLKDISAVYFEEVRRHLGTDAAHCYGGFLAVLSAWCEENNIPYQGVNVKTIKRFI
AGKGNASKSEVIEAIREKSFSPRDDNEADALALMFYISKDINKTKNP"
CDS 12431..12967
/codon_start=1
/db_xref="SPTREMBL:Q9JMM9"
/transl_table=11
/gene="gp13"
/product="unknown protein"
/protein_id="BAA89638.1"
/translation="MQKFKKEIRKKEQKERRKRVEKITQTEWAREIGVSKQYVCYLVKK
GIVKLEDGLINREQANEAVAAIRDPSQPLRRKNPENENTTNLSTMLLKTRIKNEMERGK
LLEAKAKAEIGELVAVEEVKRDAFNVARVVRNNLLNIPNRVSALLASLSDTEKIHMALT
EEITNSLQELSNIKF"
CDS 12971..14452
/codon_start=1
/db_xref="SPTREMBL:Q9JMM8"
/note="containing ankyrin-like repeat"
/transl_table=11
/gene="gp14"
/product="hypothetical protein"
/protein_id="BAA89639.1"
/translation="MSANLSLELIKCLINQPGVDVNVRGLNGKTPLHYAVEINELSMVA
LLLNRKNINPLITDDDGKSALDCAREEILQALINHKYGSEGDSLLHLAAMLNEANAVRF
LLNKGVNVNEQNALLHTPLHLAAGAGHEEIVEILIREGNADKDVLDVRNHAAMHYAVNN
KKLEVVKLLSNLGADVNIAGSGRNAMKLSSLHVAVSSSNYDERDLCLDIVRCLINAPNS
KVNLQDYENKTPLHYAERLKTIEVLLTREDIDPLVKDDSGKTPFDYAKPEIKKILMNNK
YGPEKNSLLHLAAQRGEIEIVDAILKEEIDIDIVNNKGLSPIYLAAEKGHLHVVKLLLK
KGTNYTPVLHLAIKSNNLELLKVLFTEKNGALLCRDTVINFPTLHNKYIAQREMADKRM
KKHNNIICICITVSAIAVAVYIGLTAATISNAIIFATITGILALIIAIMISEMSKRYIE
NEFQKKMFMELEECGGINSTVNNIEIEPIMSRCRQ"
CDS 14449..16278
/codon_start=1
/db_xref="SPTREMBL:Q9JMM7"
/note="similar to terminase large subunit of phage lambda"
/transl_table=11
/gene="gp15"
/protein_id="BAA89640.1"
/translation="MIYARAFSEGLRPDPQLKVSEWANEYRVLAPTAASEPGKWRTERT
PYLKEIMDSLSPSSPTEKVVFMKGAQIGGTEAGNNWIGYIIDQTPGPMLVVQPTVEMGK
RWSKGRFAPLIESTPCLKSKVKDPRSRDSGNTVQSKEFPGGIVVITGANSSVALRSMPV
KYLFLDEIDAYPGDSGGEGDPVLLSIARTNTFARRKIFLVSTPTIHGISRIEKEFEATD
KRYFFVPCPHCNYYQVLKWSQIKWENSDSRTAHYVCTECSGKIENHQKTEMLDRGEWRP
TNRVKGEKKGFHLSSLYSPVGWYSWQQAVEDFLHAKESEQLLKVWINTTLGETWVDKGE
VPDWKQLFNRREFFQIGTVPRREVVLTAGVDVQKDRLEVEVVAWGKSRESWSIDYQVFE
GDTGGGEVWGKLSELLNHHFIGENGLEYMISMMAVDAGYATQEVYNWVRGHQGSGRVMA
VKGVNKALVPLSSPSRVDITVGGQKLKRGIKLWPVGVSILKSELFQLLNILKEEEGKAL
PGYCHFPEYAPEYFKQLTAEQLVSKVVKGYTKQEWQKVRERNEVLDCRIYARAASIALG
IDRWPESKWNSLSEKPESKKSKKIVKSKWMRNV"
CDS 16522..17304
/codon_start=1
/db_xref="SPTREMBL:Q9JMM6"
/note="similar to hypothetical protein 0375 of Escherichia
coli"
/transl_table=11
/gene="gp17"
/protein_id="BAA89641.1"
/translation="MTKIIAKEYTEFLEQLKEQIATSRYKAALAVNSKLIVLYHHIGTE
ILKRQKEHGWGAKIIDQLSKDLRSAFPEMKGFSARNLTYMRQFAVEYQDTEFTQQVAAQ
LPWFHIVVILDKVKDPKERLFYFQKAIEHGWSRSIMVMQIERELYKRQGKAVTNFKDKL
PSPQSDLAHYTLKDPYIFDFLSIGDDAHEREVEKGLVGHVEKFLLELGEGFAFVGRQFH
LDVGNKDFYIDLLFYHLKLRCFVVIELKDKEFQARICR"
CDS 17554..18972
/codon_start=1
/db_xref="SPTREMBL:Q9JMM5"
/note="similar to portal protein GPB of phage lambda"
/transl_table=11
/gene="gp17"
/protein_id="BAA89642.1"
/translation="MLLKSFKQLFSKPKIKSSAWDAAGSGRRFFHFQPELGSINNLLSQ
SLETLRSRSRDMVRKNPYAANIIDTIVSNSIGTGIKPQSKARDGEFRKKVQELWLKWTD
EADSCGISDFYGLQALVCRSMIEGGECFVRLRTRKLEDRFSVPLQLQVLESEHLDNKTN
QTLGNGNVIRNGIEFNRLGQREAYYLFREHPGEGSFGESVRVPANDVLHIYKPLRPGQI
RGEPWLSSILLKLYELDQYDDAELVRKKTAAMFAGFITRLDPEANIMGEGEASEQGVAL
SGLEPGTMQLLDPGEDIKFSEPSDVGGSYEAFIRQQLRAIAIGTGITYEQLTGDLTGVN
YSSIRAGLIEFRRRCAMLQHNIMVFQFCRPVWSRWLELAVLCGELSIDEKVVKAAKEEV
KWIPQGFDWVDPLKDQQAQQMAVRNGFKSRSEVVSEMGYDVEEIDQEIAEDQKRANSLN
LIFDSDVGGNNVSK"
CDS 18935..19987
/codon_start=1
/db_xref="SPTREMBL:Q9JMM4"
/note="similar to minor capsid protein GPC of phage lambda"
/transl_table=11
/gene="gp18"
/protein_id="BAA89643.1"
/translation="MILMSGETMFLSRPLMLEAKSFELLSLHSQKQPIFKNVKHYVKNN
IEKTAIIPIHGILTKKPEAFDDFLGMTSYEKMQEEIEEALEDEKVEIILLDIDSPGGEV
NGIFDLADFIYNARSKKRIIAIANDDAYSAAYAIASSAEKIFLTRTSGVGSIGVIASHI
DQSGFDEKQGIKYSTIFAGSRKNDLNPHEPITSESLENLKSEVNRLYGMLVELIARNRS
LSIEAIKSTEAGLYFGEKAVEIGLADGVTTFFEFINNHRSVSMTTNELTEEGYENCRRE
IVEIIRLCNVSKMPEKIGEFIEQGVSIEQAREVLMELLAERTKKTEILSAIPQNSGEEL
MMQVAKSRCI"
CDS 20129..20500
/codon_start=1
/db_xref="SPTREMBL:Q9JMM3"
/transl_table=11
/gene="gp19"
/product="hypothetical protein"
/protein_id="BAA89644.1"
/translation="MTSITEQNNLGDLLKYEASSLYSRDQITVAKGQNIKLGAVVAKKT
DDGFIKVLNPAGTDGTQTAIGVITSDVNATENTKAVIITRIAMLADYAVVWPANITEEQ
KAEAIKQLEGRGIIIRKGV"
CDS 20526..21524
/codon_start=1
/db_xref="SPTREMBL:Q9JMM2"
/note="similar to unknown protein of phage Felix 01"
/transl_table=11
/gene="gp20"
/protein_id="BAA89645.1"
/translation="MQNPFTNTAFSMTALTNAMNILPINYGRIENLNLFPSRSVRFRHI
TIEEHNGVLSLLPTQVPGAPATVGKRGKRKVRTFTIPHIPHDDVVLPEEVQGIRAFGSE
NELKALADVITDHLQLMRNKHAITLEHLRMGALKGIILDADGSELLNLYNEFEITPKVV
NFALGTATTDVKRKCIEVLRHIEDNLSGEYMTGIHALVSPEFFDALTSHNKVKEAYERW
QEGAALRNDMRSGFTFCGITFEEYRGQATDPEGTVRRFIEKDTGHCFPLGTASTFTTYF
APADFNETVNTLGQPLYAKQEPRRFDRGTDLHTQSNPLPMCHRPGILVKVM"
CDS 21621..21968
/codon_start=1
/db_xref="SPTREMBL:Q9JMM1"
/transl_table=11
/gene="gp21"
/product="hypothetical protein"
/protein_id="BAA89646.1"
/translation="MTKIEPFRKRIEIGVQENIKRLLEDCLVYLGELALYKSKSKSYMV
QVLKQQPDKLYEIGEGQFVGEMLILEVSVFDVLQPMVGDIFVIGDCKYKIHTPPLRDKS
GMVWRIEAYGV"
CDS 21886..22359
/codon_start=1
/db_xref="SPTREMBL:Q9JMM0"
/transl_table=11
/gene="gp22"
/product="hypothetical protein"
/protein_id="BAA89647.1"
/translation="MIANTKYTHHHLEINLEWSGESKRMGCKMSVHIEVNSIESINAKR
GKIELAMVKALNKTALWLKAQAAKEISEEKKIKLSLIRKRLRIFKAKTSRLEVLIRANL
YDIRASTIGKIQKTRRGSKVGKHEFIGGFAAVMPKGNSGILSVKEEQHCQYKK"
CDS 22472..22948
/codon_start=1
/db_xref="SPTREMBL:Q9JML9"
/note="similar to hypothetical protein of Pseudomonas
aeruginosa"
/transl_table=11
/gene="gp23"
/protein_id="BAA89648.1"
/translation="MTKFWIDLHQAICTTLKKEILTIQTCEVYPTIRKELLAPAVLVEL
SSLEKGSDPGTGELALRVRFEARIVVDSTIENAPIIVRTLAAEVARVVNKNTWEKNVSP
AEFLSAEPDGFRPELDAYLVWMVDWSHQLHLGKSIWTENKIKPHTIIIEENVRE"
CDS 22935..23399
/codon_start=1
/db_xref="SPTREMBL:Q9JML8"
/note="similar to GPV of phage P2"
/transl_table=11
/gene="gp24"
/protein_id="BAA89649.1"
/translation="MLESNFAISELQRKLANIVRIGVVKEVDYEKAKVRVKIGEFLTDY
LPWITSKAGKDRDWSPPDINEQVVVFSPLGELSLGVVLAGIYQEKYPTLENKKEINSVK
FQDGTRLLYDKEKHHLEIEVVDKITLKAGGSSIEMTKSGIKLKAERIDLN"
CDS 23662..23988
/codon_start=1
/db_xref="SPTREMBL:Q9JML7"
/note="similar to GPW of phage P2"
/transl_table=11
/gene="gp25"
/protein_id="BAA89650.1"
/translation="MDAKTGKALEGIEHLKQSIIDILTTPINSRVMRRDYGSRLFELVD
KPINRDLTLEIYAATAEALGKFEKRFKLEKVKVEGVKEGRVTLNLEGVYLSEGKFININ
GVVV"
CDS 23991..24791
/codon_start=1
/db_xref="SPTREMBL:Q9JML6"
/note="similar to GPJ of phage P2"
/transl_table=11
/gene="gp26"
/protein_id="BAA89651.1"
/translation="MQQPNIIEPLNFEEIFSRMKEELVNRDETFSALVESDPAIKILEV
AAWRELLLRQRINEAVKSNLLKFATGEDLDNLAEFYGVERQKEEEDERFRKRIKAKIKG
WSTGGSKEYYRYHALSADKRVKDALVESKVPGSVEISILSTELSTVPEDLLEIVKKQVT
RDDIRVLTDTITVIGCNITEIDIHSRISVNSQALPEIIEIAKKQFIEKFELAKRLGWSV
TRSWIIANLFVDGVENVELIEPKEDVVVLGNECAALRNLEIELN"
CDS 24797..25951
/codon_start=1
/db_xref="SPTREMBL:Q9JML5"
/transl_table=11
/gene="gp27"
/product="hypothetical protein"
/protein_id="BAA89652.1"
/translation="MPPNATKQEKALVDATDYKVDPSCIRGFKFSLKEETLPWLIEEYE
LGEILRWVKDKRRAIVEGVKFQRLRGTPASLKIALKWANIEDITIIEEPPGKHFFELQV
GIKEVPNDFFVDAVVELAKLSLPVRSRLMRIFNDNYNVQRFILDESLFGDLLSDYSGVK
IEKDGPVLSFGRVNFFRSSGPVIRIIENYLRDHYERALSNDIYRLDVAILGETEPHTRD
YKGIYERDHLWYNLKALYPLPQSLLPSIKFAKAQIVLSDSWKLGEINSCFPVGRIEEEG
NEFVLGSDKLSGQYWNLKHKPILERFSVTHNYKVENYTDQKVRKYVLAEHNVYYKNDLD
SEQKDSIHELEKHILVFYPGVLKWHEHRHLHRSWKNSQVISLIS"
CDS 26120..26719
/codon_start=1
/db_xref="SPTREMBL:Q9JML4"
/note="hypothetical protein containig ankyrin-like repeat"
/transl_table=11
/gene="gp28"
/protein_id="BAA89653.1"
/translation="MSFSKSKFFKEVSSKNINKRNEEGETILHQAVEISNYKTVKLLIK
KGAEVNARDKNGYTPLHSACKIGGAGVEIIKELVKAGAEVNQLNKYGATPMYYIWESEK
YRLCDSKESEKASKFLREKGGITKSRELTCYGIERLVGEIADMLNRSYMPELKIIEIGE
IRKRDKSLIKKECQNLASKIISQVNEMIDEVVRKKA"
CDS 26734..27219
/codon_start=1
/db_xref="SPTREMBL:Q9JML3"
/note="hypothetical protein containing ankyrin-like repeat"
/transl_table=11
/gene="gp29"
/protein_id="BAA89654.1"
/translation="MRWIMLKLGKFNKSAKELLENSFKSIYARDKKERTDLHYAVEAKT
VKLLVEKGANVNAADVEGYTALHLAVTEKRLEIVRELIKSGADINAAEYGNKCTPLHLA
CMVGKVEIVKELVEAGAEIEQADTFGMTAMDYAKNSKEITEILKKEIDRIEKLFMRG"
CDS 27224..27655
/codon_start=1
/db_xref="SPTREMBL:Q9JML2"
/transl_table=11
/gene="gp30"
/product="hypothetical protein"
/protein_id="BAA89655.1"
/translation="MEEEIEKKVMNLERKPLGELRKIWKKVYGEEAPKHSKKYLIPRLA
YRIQEEAYGEMSRKGSKRLDYLADRLEKGKRISSDKLPVEGTELILERGEETHAVMVTD
KGLIYKEEFYTSLSAVAGKIMGMSYNGPLLFGMRDKNGS"
CDS 27627..29171
/codon_start=1
/db_xref="SPTREMBL:Q9JML1"
/note="similar to integrase of resolvase family"
/transl_table=11
/gene="gp31"
/protein_id="BAA89656.1"
/translation="MECVIKMGAEEEKMLKEVRCAIYTRKSNEDGLEQKFNSLDAQRVA
CEKYIKSKEGWVVLAKRYDDGGFSGKNLERPAIKELFEDVKKGEVDCVVVYTLDRLSRE
TKDSIEVTSFFRRHRVNFVAVTQIFDNNTPMGKFVQTVLSGAAQLEREMIVERVKNKIA
TSKEQGLWMGGTLPLGYDVKDKELIINEKEAKTVKHIFERYVELKSMAELARELNSQGY
RTKSDIFKKATVRRIITNPIYMGKIRHYEKEYEGKHEAIIEEEKWQKAQELIRNQPYRK
ARYEEALLKGIIKCKSCDVNMTLTYSKKENKRYRYYVCNNHLRGKGCESENRNVIAGEV
EKEVMKRAEQLYENWKEKTEEKIEKLWENLSFGKQKEVVKKLIRTVLVKEDGIEMSLEN
KVEFIPIWLKKKGNKCTVVEPEGKTNNALLKAVVRAHLWKRQLEEGKYESVKELSAKIN
IGTRRVQQILRLNYLAPKIKEDIVNGRQPRDLKLVDLREIPMLWSEQREKFYGSAS"
CDS complement(29459..31399)
/codon_start=1
/db_xref="SPTREMBL:Q9JML0"
/note="hypothetical protein containing ankyrin-like repeat"
/transl_table=11
/gene="gp32"
/protein_id="BAA89657.1"
/translation="MGESNGIVKSIINLLKPKSKPEPSDFEYESIIEHLSSKEHLLNEL
MNDMWYSGDLPSVRNYNEPSSLIDSKLALREQVCIWSALEYDLTPNQKKLNEELFKTLE
CLTSYYSSFDNTESLKKFLHDNKNNKDLKVILNLKRGTSESTVLHAIAGAKIDEVCPLG
NRAIDLLLDAGSDPNIKNNAGKTPLHLAVAIGYGYSIDSLLSKGANPSIVDRKGRTPQQ
IAVNNHRYDIEVFFLTDKQKKMNKELYDLLALDSDCTKNLKEFLSKHKRDSDLKVVLNI
RHGMGESKVFSYVERFAWDNEDLAQELRKIFLEAGALDYDKNIIYRQQKKGQVSKLLIN
LTSNQKEKLNKFSDKVFQAQNMAELEEIVNDAIKSGVRLNYSLSQDFFSGNEYTFTDYV
MKKISELEKNPKVASNIICQLVSKGAVFGNTVDANTLTSEFKEHKTNLKKAYRDYISNS
HKFIEIAKSATNSELKDVRVDNSVFYLEYSKDSKIDIIKITDGVRDLGLTDGDVKCGRN
IVKIGNSEVEIKTEDGIRNYTDLTEGSSIVLTFYTSLGELEVRLYPDENNKKLIRVEVS
DEDLFEEIASHEEIGQNCLLGGLSVIEAIDQGVFARSGGLMRPEVISESNNKWTGREEL
RRTSDSRGRSF"
CDS complement(32260..>32987)
/codon_start=3
/db_xref="SPTREMBL:Q9JMK9"
/transl_table=11
/gene="gp33"
/product="hypothetical protein"
/protein_id="BAA89658.1"
/translation="QKRPEAAKESIEDCVTTIVLTLGKKVLILNINEKNEFALRVPDNK
GIPIENIRGIQNVNDIKIQEITCNLYSTPSNKNPFDQYCNKNKGITVNTYDSLDKYKRG
KEILQGNFTRIVENKKFKAALSKAIESGKYDDYKKLFEEISHILHPFKSLISNEATFQA
VLHGLFSSYGEDNIKVITEFQIGGGEKLDVMLVINATDQKKEYPPVGIELKFAKKGELD
KKEKDAKDQLKRYKVKRIR"
misc_feature 1..9999
/note="@@@The following are for testing purposes@@@"
misc_feature (3481.3740)..(29173.29458)
/note="Testing the (num.num) location"
rRNA <1..>318
/note="16S rRNA"
primer_bind complement(1353..1373)
/note="PCR primer"
mRNA join(<871..2354,2414..>3143)
/gene="Amy I"
/product="amylase"
CDS join(AB042975.1:884..1057,AB042976.1:99..197,
AB042977.1:406..582,AB042978.1:371..497,
AB042979.1:460..634,AB042980.1:353..472,
AB042980.1:857..1052,AB042981.1:444..539,
AB042981.1:1368..1536,174..352)
/gene="CYP51"
/product="lanosterol 14 alpha-demethylase"
/protein_id="BAA96092.1"
/citation=[5]
/translation="MVLLGLLQAGGSVLGQAMEQVTGVNLLSSLLLACAFTLILVYLFR
QAIGHLAPLPAGAKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKT
FTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGL
NIAHFRQHVSIIEKETKEYFQSWGESGERNLFEALSELIILTASHCLHGKEIRSQLNEK
VAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKNIFYKAIQKRRQSEEKIDDI
LQTLLDSTYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQEKCYLE
QKTVCGEDLPPLTYDQLKDLNLLDRCIKETLRLRPPIMTMMRMAKTPQTVAGYTIPPGH
QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQ
IKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRSK"
CDS join(871..2354,2414..3143)
/codon_start=1
/db_xref="SPTREMBL:O02413"
/gene="Amy I"
/product="amylase"
/protein_id="AAB60935.1"
/translation="MKQLLVILYSALVVTNAQLPGFSFGPSGFGGFSLSNPLFNASFAP
ANPVDRISDIASRFRDVANNVQRNLPKIPQFTNPLSAFSRFARPTSSSGSTNANSNNNQ
NFNSNQANEGTSGARNAINEVLNRIPGLSGVPRVPEIPKVPEIPSFGNPSDVFGPFVNS
LRNMTNQGIKDPGQIFNQVNTFLPDVSRIANSVANYAKSAANSGIWKNISNDIKHEMQN
RIESMTQILSNITSAMKNIAQSVPNLMQDQSLNTTLRNQPFFFPGHSGIVHLFEWKFSD
IAEECEKVLGPNGYGGVQVSPINEYLVSPSRAWWERYQPISFEIKSRSGNEKQFSDMVK
RCMKAGVRIYVDVVVNHMAAPGASAPLYGTAGSTCDPLARDYPGVPFNRSHFHADCQIN
DYNNATNVRNCELAALPDLDQSNRFVQNKIIQYLNHLLDLGVAGFRMDACKHMRPEDLK
SIYDRLKPVNAMFLFPPGARPFIFQEVIDLGTEGVSAKEYTNLGVVTEFNWCIVVGGVF
RGTTNADALELLTKNGSAGVLLPSSQALVFVDNHDNQRGHGAGGDSILTYKTKPQYIQA
VAFTLATDYGIARVMSSYNFSDPDQGPPQDTVQVIRSPGFAVNNSCSTGWVCEHRWPEI
RKMIQFKNFVAGSSLDHIQATQNTFAFCRGEKGFIVFNNSENTITQQYHTCLPQGQYCD
IISGEVSQSTCTGTVVNVDANGDAEITLPKNSVVAIYIPSRLS"
variation 912..1167
/note="ClaI fragment deleted in pSW36, constitutive
phenotype"
/replace=""
/gene="amiC"
polyA_signal complement(598..603)
/gene="hsp82"
exon complement(<1130..3295)
/number=2
/gene="hsp82"
intron complement(3296..3854)
/number=1
/gene="hsp82"
exon complement(3855..3977)
/number=1
/gene="hsp82"
mRNA join(complement(3855..3977),complement(1130..3295))
/partial
/gene="hsp82"
mRNA complement(join(1130..3295,3855..3977))
/partial
/gene="hsp82"
mRNA join(4904..5028,5260..>7425)
/gene="hsp82"
misc_feature 754^755
/note="putative nicking site"
misc_feature 32987^1
/note="circular sequence join"
rep_origin 755
enhancer order(220..225,230..236)
/note="putative"
/standard_name="NtrC binding site"
polyA_signal one_of(368..373,459..464)
/note="Did we save the note?"
polyA_site one_of(514,534,542)
primer_bind order(54..73,complement(206..225))
STS 54..225
/note="STS49"
mRNA 1..542
misc_feature group(226..288,688..754)
/note="encodes putative transmembrane helices which enclose
a presumably periplasmic domain"
/gene="citA"
Cds 1289..1879
/db_xref="SWISS-PROT:P10932"
/note="aliphatic amidase regulator, positive regulator of
""amiE"" gene"
/transl_table=11
/gene="amiR"
/protein_id="CAA32023.1"
/TransLation="MSANSLLGSLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPP
PEAFDVPVDVVFTSIFQNGHHDEIAALLAAGTPRTTLVALVEYESPAVLSQIIELECHG
VITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIAGQARINQAKVLLMQRHGWD
EREAHQHLSREAMKRREPILKIAQELLGNEPSA"
CODS 135..1292
/db_xref="SWISS-PROT:P27017"
/note="negative regulator of amiR"
/transl_table=11
/gene="amiC"
/protein_id="CAA32024.1"
/translation="MGSHQERPLIGLLFSETGVTADIERSHAYGALLAVEQLNREGGVG
GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCY
PTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHL
YRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYG
DGRRPPIASLTTSEAEVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENAT
ITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSS
RIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASMGGGPLP"
source 1..18085
/db_xref="taxon:562"
/note="Nucleotide position 2327544-2345628 from the
initiation site of ThrA (0 min.)."
/note="This clone is from Kohara lambda miniset library"
/mol_type="genomic DNA"
/organism="Escherichia coli"
/clone="Kohara clone #376"
/clone_lib="Kohara lambda miniset library"
/map="50.2 min"
/strain="K12"
CDS <1..534
/codon_start=1
/db_xref="SWISS-PROT:P76461"
/note="ORF_ID:o374#7"
/note="similar to [SwissProt Accession Number P44873]"
/transl_table=11
/product="Acetyl-CoA:acetyltransferase (EC 2.3.1.9)
(Acetoacetyl-CoA thiolase)."
/protein_id="BAA16046.1"
/translation="EFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEE
SAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFA
AQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCI
GGGQGIAMVIERLN"
CDS complement(10034..12661)
/codon_start=1
/db_xref="SWISS-PROT:P09097"
/note="similar to [SwissProt Accession Number P09097]"
/transl_table=11
/gene="gyrA"
/gene="hisW"
/gene="nalA"
/gene="parD"
/product="DNA GYRASE SUBUNIT A (EC 5.99.1.3)."
/protein_id="BAA16048.1"
/translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVH
RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVD
GQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI
PNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI
INGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELV
KEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHG
QPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRH
APTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI
LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKR
RTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED
FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL
PVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV
MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYG
KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI
SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDE
PEEE"
|