emboss-test 6.6.0-1 / usr / share / EMBOSS / test / data / pax.align

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/usr/share/EMBOSS/test/data/pax.align is in emboss-test 6.6.0-1.

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PileUp



   MSF:  603  Type: P    Check:  9004   .. 

 Name: PAX4_HUMAN oo  Len:  603  Check:  6594  Weight:  11.2
 Name: PAX6_HUMAN oo  Len:  603  Check:  7176  Weight:  9.1
 Name: PAX3_HUMAN oo  Len:  603  Check:  7760  Weight:  9.5
 Name: PAX7_HUMAN oo  Len:  603  Check:  4677  Weight:  13.7
 Name: PAX1_HUMAN oo  Len:  603  Check:  9671  Weight:  8.7
 Name: PAX9_HUMAN oo  Len:  603  Check:   565  Weight:  12.0
 Name: PAX2_HUMAN oo  Len:  603  Check:  9553  Weight:  8.7
 Name: PAX5_HUMAN oo  Len:  603  Check:   448  Weight:  11.2
 Name: PX8A_HUMAN oo  Len:  603  Check:  6763  Weight:  7.5
 Name: PX8D_HUMAN oo  Len:  603  Check:  5797  Weight:  7.9

//



PAX4_HUMAN      .......... .......... .........M HQDGISSMNQ LGGLFVNGRP 
PAX6_HUMAN      .......... .......... .......... MQNSHSGVNQ LGGVFVNGRP 
PAX3_HUMAN      MTTLAGAVPR MMRPGPGQNY PRSGFPLEVS TPLGQGRVNQ LGGVFINGRP 
PAX7_HUMAN      MAALPGTVPR MMRPAPGQNY PRTGFPLEVS TPLGQGRVNQ LGGVFINGRP 
PAX1_HUMAN      .......... .......... .......... MEQTYGEVNQ LGGVFVNGRP 
PAX9_HUMAN      .......... .......... .......... MEPAFGEVNQ LGGVFVNGRP 
PAX2_HUMAN      .......... ........MD MHCKADPFSA MHPGHGGVNQ LGGVFVNGRP 
PAX5_HUMAN      .......... ........MD LEKNYPTPRT SRTGHGGVNQ LGGVFVNGRP 
PX8A_HUMAN      .......... .......... .....MPHNS IRSGHGGLNQ LGGAFVNGRP 
PX8D_HUMAN      .......... .......... .....MPHNS IRSGHGGLNQ LGGAFVNGRP 


PAX4_HUMAN      LPLDTRQQIV RLAVSGMRPC DISRILKVSN GCVSKILGRY YRTGVLEPKG 
PAX6_HUMAN      LPDSTRQKIV ELAHSGARPC DISRILQVSN GCVSKILGRY YETGSIRPRA 
PAX3_HUMAN      LPNHIRHKIV EMAHHGIRPC VISRQLRVSH GCVSKILCRY QETGSIRPGA 
PAX7_HUMAN      LPNHIRHKIV EMAHHGIRPC VISRQLRVSH GCVSKILCRY QETGSIRPGA 
PAX1_HUMAN      LPNAIRLRIV ELAQLGIRPC DISRQLRVSH GCVSKILARY NETGSILPGA 
PAX9_HUMAN      LPNAIRLRIV ELAQLGIRPC DISRQLRVSH GCVSKILARY NETGSILPGA 
PAX2_HUMAN      LPDVVRQRIV ELAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIKPGV 
PAX5_HUMAN      LPDVVRQRIV ELAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIKPGV 
PX8A_HUMAN      LPEVVRQRIV DLAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIRPGV 
PX8D_HUMAN      LPEVVRQRIV DLAHQGVRPC DISRQLRVSH GCVSKILGRY YETGSIRPGV 


PAX4_HUMAN      IGGSKPR.LA TPPVVARIAQ LKGECPALFA WEIQRQLCAE GLCTQDKTPS 
PAX6_HUMAN      IGGSKPR.VA TPEVVSKIAQ YKRECPSIFA WEIRDRLLSE GVCTNDNIPS 
PAX3_HUMAN      IGGSKPKQVT TPDVEKKIEE YKRENPGMFS WEIRDKLLKD AVCDRNTVPS 
PAX7_HUMAN      IGGSKPRQVA TPDVEKKIEE YKRENPGMFS WEIRDRLLKD GHCDRSTVPS 
PAX1_HUMAN      IGGSKPR.VT TPNVVKHIRD YKQGDPGIFA WEIRDRLLAD GVCDKYNVPS 
PAX9_HUMAN      IGGSKPR.VT TPTVVKHIRT YKQRDPGIFA WEIRDRLLAD GVCDKYNVPS 
PAX2_HUMAN      IGGSKPK.VA TPKVVDKIAE YKRQNPTMFA WEIRDRLLAE GICDNDTVPS 
PAX5_HUMAN      IGGSKPK.VA TPKVVEKIAE YKRQNPTMFA WEIRDRLLAE RVCDNDTVPS 
PX8A_HUMAN      IGGSKPK.VA TPKVVEKIGD YKRQNPTMFA WEIRDRLLAE GVCDNDTVPS 
PX8D_HUMAN      IGGSKPK.VA TPKVVEKIGD YKRQNPTMFA WEIRDRLLAE GVCDNDTVPS 


PAX4_HUMAN      ..VSSINRVL RALQ.EDQGL PCT......R LRS....... ......PAVL 
PAX6_HUMAN      ..VSSINRVL RNLASEKQQM GADGMYDKLR MLNGQTGSWG TRPGWYPGTS 
PAX3_HUMAN      ..VSSISRIL RSKFGKGEEE EADLE....R KEAEESEKK. ......AKHS 
PAX7_HUMAN      GLVSSISRVL RIKFGKKEEE ..DEA....D KKEDDGEKK. ......AKHS 
PAX1_HUMAN      ..VSSISRIL RNKIGSLAQ. PGPYEASKQ. .PPSQ..... ......PTLP 
PAX9_HUMAN      ..VSSISRIL RNKIGNLAQ. QGHYDSYKQH QPTPQ..... ......PALP 
PAX2_HUMAN      ..VSSINRII RTKVQQPF.H PTPDGAGTGV TAPGH..... ......TIVP 
PAX5_HUMAN      ..VSSINRII RTKVQQP... ..PNQP...V PASSH..... ......SIVS 
PX8A_HUMAN      ..VSSINRII RTKVQQPFNL PMDSCVATKS LSPGH..... ......TLIP 
PX8D_HUMAN      ..VSSINRII RTKVQQPFNL PMDSCVATKS LSPGH..... ......TLIP 


PAX4_HUMAN      APAVLTPHSG SETPRG.... .THPGTG... .......... ...HRNRTIF 
PAX6_HUMAN      VPGQPTQDGC QQQEGGGENT NSISSNGEDS DEAQMRLQLK RKLQRNRTSF 
PAX3_HUMAN      IDGILSERAS APQSDEGSDI DSEPDLP... ........LK RKQRRSRTTF 
PAX7_HUMAN      IDGILGDKGN R..LDEGSDV ESEPDLP... ........LK RKQRRSRTTF 
PAX1_HUMAN      YNHIYQYPYP SPVSPTGAKM GSHPGVPG.. ......TAGH VSIPRSWP.. 
PAX9_HUMAN      YNHIYSY..P SPITAAAAKV PTPPGVPA.. ......IPGS VAMPRTWP.. 
PAX2_HUMAN      STASPPV..S SASNDPVG.S YSINGILG.. ......IPRS NGEKRKRDEV 
PAX5_HUMAN      TGSVTQV..S SVSTDSAGSS YSISGILG.. ......ITSP SADTNKR... 
PX8A_HUMAN      SSAVTPP..E SPQSDSLGST YSINGLLG.. ......IAQP GSDKRKMD.. 
PX8D_HUMAN      SSAVTPP..E SPQSDSLGST YSINGLLG.. ......IAQP GSDKRKMD.. 


PAX4_HUMAN      S......... .......... ....PSQAEA LEKEFQRGQY PDSVARGKLA 
PAX6_HUMAN      T......... .......... ....QEQIEA LEKEFERTHY PDVFARERLA 
PAX3_HUMAN      T......... .......... ....AEQLEE LERAFERTHY PDIYTREELA 
PAX7_HUMAN      T......... .......... ....AEQLEE LEKAFERTHY PDIYTREELA 
PAX1_HUMAN      .......... .......... ....SAHSVS NILGIRTFME QTGALAGSEG 
PAX9_HUMAN      .......... .......... ....SSHSVT DILGIRSITD QVSDSS.... 
PAX2_HUMAN      EVYTDPAHIR GGGGLHLVWT LRDVSEGSVP NGDSQSGVDS LRKHLRADTF 
PAX5_HUMAN      K..RD..... .......... .EGIQESPVP NGHSLPGRDF LRKQMRGDLF 
PX8A_HUMAN      D..SD..... .......... ....QDSCRL SIDSQSSSSG PRKHLRTDAF 
PX8D_HUMAN      D..SD..... .......... ....QDSCRL SIDSQSSSSG PRKHLRTDAF 


PAX4_HUMAN      TATSLPEDTV RVWFSNRRAK WRRQEKLKWE MQL....... ......PG.A 
PAX6_HUMAN      AKIDLPEARI QVWFSNRRAK WRREEKLRNQ RRQ....... ......ASNT 
PAX3_HUMAN      QRAKLTEARV QVWFSNRRAR WRKQAGANQL MAFNHLIPGG FPPTAMPTLP 
PAX7_HUMAN      QRTKLTEARV QVWFSNRRAR WRKQAGANQL AAFNHLLPGG FPPTGMPTLP 
PAX1_HUMAN      TAYSPKMEDW AGVNRTAFPA TP..AVNGLE KP........ ..ALEADIKY 
PAX9_HUMAN      PYHSPKVEEW SSLGRNNFPA AAPHAVNGLE KG........ ..ALEQEAKY 
PAX2_HUMAN      TQQQLEALDR VFERPSYPDV FQASEHIKSE QGNEYS.LPA LTPGLDEVKS 
PAX5_HUMAN      TQQQLEVLDR VFERQHYSDI FTTTEPIKPE QTTEYSAMAS LAGGLDDMKA 
PX8A_HUMAN      SQHHLEPLEC PFERQHYPEA YASPSHTKGE QG.LYP.LPL LNSTLDDGKA 
PX8D_HUMAN      SQHHLEPLEC PFERQHYPEA YASPSHTKGE QG.LYP.LPL LNSTLDDGKA 


PAX4_HUMAN      SQGLTVPRVA PGIISA.... .........Q QSPGSVPTA. .......... 
PAX6_HUMAN      PSHIPISSSF STSVYQ.... .........P IPQPTTPVS. .......... 
PAX3_HUMAN      TYQLSETSYQ PTSIPQAVSD PSSTVHRPQP LPPSTVHQS. .......... 
PAX7_HUMAN      PYQLPDSTYP TTTISQ...D GGSTVHRPQP LPPSTMHQG. .......... 
PAX1_HUMAN      TQSASTLSAV GGFLPA.... .........C AYPASNQHG. .......... 
PAX9_HUMAN      GQAPNGLPAV GSFVSASS.. ........MA PYPTPAQVSP YM........ 
PAX2_HUMAN      SLSASTNPEL GSNVSGT... .........Q TYPVVTGRD. .......... 
PAX5_HUMAN      NLASPTPADI GSSVPGP... .........Q SYPIVTGRD. .......... 
PX8A_HUMAN      TLT.PSNTPL GRNLSTH... .........Q TYPVVADPHS PFAIKQETPE 
PX8D_HUMAN      TLT.PSNTPL GRNLSTH... .........Q TYPVVADAP. PFWI..CS.. 


PAX4_HUMAN      ....ALPALE PLG....... .......... ..PSCYQLCW ATAP...... 
PAX6_HUMAN      ....SFTSGS MLGRT..... .......... ..DTALTNTY SALPPMP... 
PAX3_HUMAN      ....TIPSNP DSSSAYCLPS TRHGFSS... YTDSFVPPSG PSNPMNPTIG 
PAX7_HUMAN      ....GLAAAA AAADTSSAYG ARHSFSS... YSDSFMNPAA PSNHMNP.VS 
PAX1_HUMAN      ..VYSAPGGG YLAP...... .......... .GPPWPPAQG PPLAPP.... 
PAX9_HUMAN      ..TYSAAPSG YVA....... .......... .GHGWQHAGG TSLSP..... 
PAX2_HUMAN      .....MASTT LPG....... .......... .YPPHVPPTG Q......... 
PAX5_HUMAN      .....LASTT LPG....... .......... .YPPHVPPAG Q......... 
PX8A_HUMAN      VSSSSSTPSS LSSSAFLDLQ QVGSGVPPFN AFPHAASVYG QFTGQALLSG 
PX8D_HUMAN      ....KSAPGS RPS....... .....MP... .FPMLPPCTG SSRARPSSQG 


PAX4_HUMAN      .......... .......... .....ERCLS DTPPKACLKP CWDCGSFLLP 
PAX6_HUMAN      .......... .......... .SFTMANNLP MQPPVPSQTS SYSCMLPTSP 
PAX3_HUMAN      NGL.SPQVM. .......... GLLTNHGGVP HQPQTDYALS PLTGGLEPTT 
PAX7_HUMAN      NGL.SPQVM. .......... SILGNPSAVP PQPQADFSIS PLHGGLDSAT 
PAX1_HUMAN      .......... .......... GAGVAVHGGE LAAAMTFKHR EGTDRKPP.. 
PAX9_HUMAN      .......... .......... ......HNCD IPASLAFKGM QAARE..... 
PAX2_HUMAN      .......... .......... GSYPTSTLAG MVPGSEFSGN PYSHPQYTAY 
PAX5_HUMAN      .......... .......... GSYSAPTLTG MVPGSEFSGS PYSHPQYSSY 
PX8A_HUMAN      REMVGPTLPG YPPHIPTSGQ GSYASSAIAG MVAGSEYSGN AYGHTPYSSY 
PX8D_HUMAN      ERWWGPRCP. .......... DTHPTSPPAD RAAMPPLPSQ AWWQEVN... 


PAX4_HUMAN      VIAPSCVDVA WP.CLDASLA HHLIGGAGKA TPTHFS.... .......... 
PAX6_HUMAN      SVNGRSYDTY TPPHMQTHMN SQPMGTSGTT STGLISPGVS VPVQVPGSEP 
PAX3_HUMAN      TVSASCSQRL DHMKSLDSLP TSQSYCPPTY STTGYSMDPV TGYQYGQYGQ 
PAX7_HUMAN      SISASCSQRA DSIKPGDSLP TSQAYCPPTY STTGYSVDPV AGYQYGQYGQ 
PAX1_HUMAN      ..SSGSKAPD ALSSLH.... ....GLPIPA STS....... .......... 
PAX9_HUMAN      ..GSHSVTAS AL........ .......... .......... .......... 
PAX2_HUMAN      NEAWRFSNPA LLSSPYYYSA APR.SAPAAR AAAYDRH... .......... 
PAX5_HUMAN      NDSWRFPNPG LLGSPYYYSA AARGAAPPAA ATAYDRH... .......... 
PX8A_HUMAN      SEAWGFPNSS LLSSPYYYSS TSRPSAPPTT ATAFDHL... .......... 
PX8D_HUMAN      ..TLAMPMAT PPTPP..... TARPGASPTP AC........ .......... 


PAX4_HUMAN      .....HWP.. .......... .......... .......... .......... 
PAX6_HUMAN      DMS.QYWPRL Q......... .......... .......... .......... 
PAX3_HUMAN      S...KPWTF. .......... .......... .......... .......... 
PAX7_HUMAN      SECLVPWASP VPIPSPTPRA SCLFMESYKV VSGWGMSISQ MEKLKSSQME 
PAX1_HUMAN      .......... .......... .......... .......... .......... 
PAX9_HUMAN      .......... .......... .......... .......... .......... 
PAX2_HUMAN      .......... .......... .......... .......... .......... 
PAX5_HUMAN      .......... .......... .......... .......... .......... 
PX8A_HUMAN      .......... .......... .......... .......... .......... 
PX8D_HUMAN      .......... .......... .......... .......... .......... 


PAX4_HUMAN      ...
PAX6_HUMAN      ...
PAX3_HUMAN      ...
PAX7_HUMAN      QFT
PAX1_HUMAN      ...
PAX9_HUMAN      ...
PAX2_HUMAN      ...
PAX5_HUMAN      ...
PX8A_HUMAN      ...
PX8D_HUMAN      ...

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