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<div class="tocheader toctoggle" id="toc__header">Table des matières</div>
<div id="toc__inside">
<ul class="toc">
<li class="level1"><div class="li"><span class="li"><a href="#connecting_freediams_to_external_emr" class="toc">Connecting FreeDiams to external EMR</a></span></div>
<ul class="toc">
<li class="level2"><div class="li"><span class="li"><a href="#usage_of_the_command_line" class="toc">Usage of the command line</a></span></div>
<ul class="toc">
<li class="level3"><div class="li"><span class="li"><a href="#params_of_the_command_line" class="toc">Params of the command line</a></span></div></li>
<li class="level3"><div class="li"><span class="li"><a href="#examples" class="toc">Examples</a></span></div></li>
</ul>
</li>
<li class="level2"><div class="li"><span class="li"><a href="#the_exchange_files" class="toc">The exchange files</a></span></div>
<ul class="toc">
<li class="level3"><div class="li"><span class="li"><a href="#the_in_exchange_file" class="toc">The "in" exchange file</a></span></div></li>
<li class="level3"><div class="li"><span class="li"><a href="#xml_structuration_of_the_in_exchange_file" class="toc">XML structuration of the "in" exchange file</a></span></div></li>
<li class="level3"><div class="li"><span class="li"><a href="#defaults" class="toc">Defaults</a></span></div></li>
</ul>
</li>
<li class="level2"><div class="li"><span class="li"><a href="#the_out_exchange_file" class="toc">The "out" exchange file</a></span></div>
<ul class="toc">
<li class="level3"><div class="li"><span class="li"><a href="#file_format" class="toc">File format</a></span></div></li></ul>
</li></ul>
</li></ul>
</div>
</div>
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<a href="en/freediams?tag=en:freediams" class="wikilink1" title="en:freediams" rel="tag">freediams</a>,
<a href="en/usermanual?tag=en:usermanual" class="wikilink1" title="en:usermanual" rel="tag">usermanual</a>,
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<h1><a name="connecting_freediams_to_external_emr" id="connecting_freediams_to_external_emr">Connecting FreeDiams to external EMR</a></h1>
<div class="level1">
<p>
<p><div class="notedoc">This page is up-to-date.
</div></p>
</p>
</div>
<h2><a name="usage_of_the_command_line" id="usage_of_the_command_line">Usage of the command line</a></h2>
<div class="level2">
<p>
FreeDiams is thought as an external “module”. This “module” can be used by many software. At present, MedinTux and GNUMed are configurable to use this software as a prescriber.
</p>
<p>
In order to interface software with FreeDiams, just inform the command line params and/or use the exchange-in file.
</p>
</div>
<h3><a name="params_of_the_command_line" id="params_of_the_command_line">Params of the command line</a></h3>
<div class="level3">
<p>
In most cases, it is recommended to inform FreeDiams' datas with the exchange-in file instead of the command line (see following).
</p>
<p>
You can, at any time, check the transmitted params (by the command line or the exchange-in file) thanks to the <strong>About</strong> dialog, item <strong>Application/Command line</strong>.
</p>
</div>
<h4><a name="params_concerning_the_user_s_interface_of_freediams" id="params_concerning_the_user_s_interface_of_freediams">Params concerning the user's interface of FreeDiams</a></h4>
<div class="level4">
<ul>
<li class="level1"><div class="li"> –version,-version,-v: Displays the current version of FreeDiams.</div>
</li>
<li class="level1"><div class="li"> –selection-only : Starts FreeDiams in Selection Only Mode</div>
</li>
<li class="level1"><div class="li"> –chrono: log chronos on various functions of the tester interactions (proposed for debugging)</div>
</li>
<li class="level1"><div class="li"> –blockpatientdatas : value can be : 0 or 1. User can/can't modify patient's datas inside the FreeDiams session.</div>
</li>
<li class="level1"><div class="li"> –drugsdb-uid : Drugs database Unique identifier to use at startup</div>
</li>
</ul>
</div>
<h4><a name="params_used_for_the_exchange_files" id="params_used_for_the_exchange_files">Params used for the exchange files</a></h4>
<div class="level4">
<ul>
<li class="level1"><div class="li"> –medintux: defines a specific user MedinTux.</div>
</li>
<li class="level1"><div class="li"> –exchange-in=”/path/to/xml/exchange-in.xml” : defines the “in” exchange file.</div>
</li>
<li class="level1"><div class="li"> –exchange-out=“xxx” : “xxx” is the file that FreeDiams will write, given PATH write permission.</div>
</li>
<li class="level1"><div class="li"> –exchange-format=“xml html html_xml” : format of the exchange out file (select a format; default is <em>html_xml</em>)</div>
</li>
</ul>
</div>
<h4><a name="params_used_for_external_emrs" id="params_used_for_external_emrs">Params used for external EMRs</a></h4>
<div class="level4">
<ul>
<li class="level1"><div class="li"> –emr-name : name of the EMR (will be returned without any modification in the “out” exchange file)</div>
</li>
<li class="level1"><div class="li"> –emr-uid : EMR session UID (will be returned without any modification in the “out” exchange file)</div>
</li>
</ul>
</div>
<h4><a name="params_used_to_transmit_patient_s_datas" id="params_used_to_transmit_patient_s_datas">Params used to transmit patient's datas</a></h4>
<div class="level4">
<ul>
<li class="level1"><div class="li"> <strong>Identity: </strong></div>
<ul>
<li class="level2"><div class="li"> –patientuid : Patient UID (will be returned without any modification in the “out” exchange file)</div>
</li>
<li class="level2"><div class="li"> –patientname=“xx xx xx” defines the name of the patient.</div>
</li>
<li class="level2"><div class="li"> –patientfirstname=“xx xx” define the firstname of the patient.</div>
</li>
<li class="level2"><div class="li"> –gender=M: defines the sex (can be equal to 'M' for Male, 'F' Female, 'H' hermaphroditism)</div>
</li>
<li class="level2"><div class="li"> –dateofbirth=“yyyy/MM/dd” defines the data of birth of patient</div>
</li>
</ul>
</li>
</ul>
<ul>
<li class="level1"><div class="li"> <strong>Physiological datas:</strong></div>
<ul>
<li class="level2"><div class="li"> –weight=“dd” defines the patient's weight (kg)</div>
</li>
<li class="level2"><div class="li"> –weight-unit : value can be : Kg/lbs</div>
</li>
<li class="level2"><div class="li"> –height=“ddd”: sets the size of the patient</div>
</li>
<li class="level2"><div class="li"> –height-unit : value can be : cm/inches</div>
</li>
<li class="level2"><div class="li"> –crcl=“dd.d” defines the clearance of creatinine of the patient</div>
</li>
<li class="level2"><div class="li"> –crcl-unit</div>
</li>
<li class="level2"><div class="li"> –creatinine=“dd” : defines the patient's serum creatinine </div>
</li>
<li class="level2"><div class="li"> –creatinine-unit: (mg/l or mmol/l)</div>
</li>
</ul>
</li>
</ul>
<p>
* <strong>Patient's precautions:</strong> (allergies and intolerances)
</p>
<ul>
<li class="level1"><div class="li"> <strong>Allergies:</strong></div>
<ul>
<li class="level3"><div class="li"> –drugs-uid-allergies: List of the drugs UID with known allergy (separate with a <em>;</em> )</div>
</li>
<li class="level3"><div class="li"> –atc-allergies: : List of ATC codes with known allergy (separate with a <em>;</em> )</div>
</li>
<li class="level3"><div class="li"> –inn-allergies: : List of INN labels with known allergy (separate with a <em>;</em> - Label must be extracted from the ATC classification of FreeDiams)</div>
</li>
</ul>
</li>
<li class="level2"><div class="li"> <strong>Intolerances:</strong></div>
<ul>
<li class="level3"><div class="li"> –drugs-uid-Intolerances: List of the drugs UID with known intolerance (separate with a <em>;</em> )</div>
</li>
<li class="level3"><div class="li"> –atc-Intolerances: : List of ATC codes with known intolerance (separate with a <em>;</em> )</div>
</li>
<li class="level3"><div class="li"> –inn-Intolerances: : List of INN labels with known intolerance (separate with a <em>;</em> - Label must be extracted from the ATC classification of FreeDiams)</div>
</li>
</ul>
</li>
</ul>
</div>
<h4><a name="params_for_the_freemedforms_project_participants" id="params_for_the_freemedforms_project_participants">Params for the FreeMedForms project participants</a></h4>
<div class="level4">
<ul>
<li class="level1"><div class="li"> –transmit-dosage = transmit personnal protocols to the scitific commitee server.</div>
</li>
</ul>
</div>
<h3><a name="examples" id="examples">Examples</a></h3>
<div class="level3">
<ul>
<li class="level1"><div class="li"> Linux/*BSD :</div>
</li>
</ul>
<pre class="code">freediams --exchange-in="/home/me/exchange-in.xml"</pre>
<ul>
<li class="level1"><div class="li"> Win :</div>
</li>
</ul>
<pre class="code">freediams.exe --exchange-in="c:\Files\exchangein.xml"</pre>
<ul>
<li class="level1"><div class="li"> Mac (don't forget the bundle) :</div>
</li>
</ul>
<pre class="code">FreeDiams.app/Contents/MacOs/FreeDiams --exchange-in="/Users/me/exchange-in.xml"</pre>
</div>
<h2><a name="the_exchange_files" id="the_exchange_files">The exchange files</a></h2>
<div class="level2">
</div>
<h3><a name="the_in_exchange_file" id="the_in_exchange_file">The "in" exchange file</a></h3>
<div class="level3">
<p>
All files are UTF-8 encoded.<br/>
Instead of using the command line to inform the various parameters used in FreeDiams, the EMRs should use the <acronym title="Extensible Markup Language">XML</acronym> encoded exchange-in file. <br/>
When you specify an exchange-in file, the command line params are replaced with the <acronym title="Extensible Markup Language">XML</acronym> values.<br/>
You can use both (command line and xml in file) to define params to pass to FreeDiams. <br/>
The structure of this file must meet the following requirements.
</p>
</div>
<h3><a name="xml_structuration_of_the_in_exchange_file" id="xml_structuration_of_the_in_exchange_file">XML structuration of the "in" exchange file</a></h3>
<div class="level3">
</div>
<div class="plugin_include_content" id="plugin_include__common:manuals:freediams:exchangeinfile">
<pre class="code xml"><span class="sc3"><span class="re1"><FreeDiams_In</span> <span class="re0">version</span>=<span class="st0">"0.5.0"</span><span class="re2">></span></span>
<span class="sc3"><span class="re1"><ConfigFile</span> <span class="re0">value</span>=<span class="st0">"/absolute/file/specification/to/the/required/configFile.ini"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><ExchangeOut</span> <span class="re0">value</span>=<span class="st0">"/absolute/file/specification/to/the/required/exchange_File.txt"</span> <span class="re0">format</span>=<span class="st0">"xml html html_xml"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><DrugsDatabase</span> <span class="re0">uid</span>=<span class="st0">"FREEDIAMS_DRUGS_DATABASE_UID"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><EMR</span> <span class="re0">name</span>=<span class="st0">"NameWillBeShownInTheMainWindowTitle"</span> <span class="re0">uid</span>=<span class="st0">"SessionUIDWillBeReturnedInOutputFile"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><Patient<span class="re2">></span></span></span>
<span class="sc3"><span class="re1"><Identity</span> <span class="re0">lastnames</span>=<span class="st0">"Family or equivalent name e.g. Kirk"</span></span>
<span class="sc3"> <span class="re0">firstnames</span>=<span class="st0">"James Tiberius"</span></span>
<span class="sc3"> <span class="re0">uid</span>=<span class="st0">"EMR Patient's UID"</span></span>
<span class="sc3"> <span class="re0">dob</span>=<span class="st0">"yyyy/MM/dd"</span></span>
<span class="sc3"> <span class="re0">gender</span>=<span class="st0">"M or F or H"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><Creatinine</span> <span class="re0">value</span>=<span class="st0">"12"</span> <span class="re0">unit</span>=<span class="st0">"mg/l or mmol/l"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><Weight</span> <span class="re0">value</span>=<span class="st0">"70"</span> <span class="re0">unit</span>=<span class="st0">"kg or lbs"</span> <span class="re2">/></span></span>
<span class="sc3"><span class="re1"><Height</span> <span class="re0">value</span>=<span class="st0">"170"</span> <span class="re0">unit</span>=<span class="st0">"cm or "</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><InnAllergies</span> <span class="re0">value</span>=<span class="st0">"inn1;inn2;inn3"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><ATCAllergies</span> <span class="re0">value</span>=<span class="st0">"ATC1;ATC2;ATC3"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><DrugsUidAllergies</span> <span class="re0">value</span>=<span class="st0">"7655668;876769;656789"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><InnIntolerances</span> <span class="re0">value</span>=<span class="st0">"inn1;inn2;inn3"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><ATCIntolerances</span> <span class="re0">value</span>=<span class="st0">"ATC1;ATC2;ATC3"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><DrugsUidIntolerances</span> <span class="re0">value</span>=<span class="st0">"7655668;876769;656789"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"><ICD10</span> <span class="re0">value</span>=<span class="st0">"J11.0;A22;Z23"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"></Patient<span class="re2">></span></span></span>
<span class="sc3"><span class="re1"><Ui</span> <span class="re0">editmode</span>=<span class="st0">"select-only or prescriber"</span> <span class="re0">blockPatientDatas</span>=<span class="st0">"0/1"</span><span class="re2">/></span></span>
<span class="sc3"><span class="re1"></FreeDiams_In<span class="re2">></span></span></span></pre>
<p>
<p><div class="noteclassic">
FreeDiams will “read-only” this <acronym title="Extensible Markup Language">XML</acronym> file for patient and allergy/intolerance data. If an “ExchangeOut” file is specified, FreeDiams will read it <strong>only</strong> for prescription data (ignoring patient data). On close, FreeDiams will write the currently edited prescription to the “ExchangeOut” file, so that EMR can retreive information.
</div></p>
</p>
<p>
<p><div class="noteimportant">
<strong>Please note the difference between relative and absolute path.</strong>
</p>
<ul>
<li class="level1"><div class="li"> absolute path starts with <em>'/'</em> or <em>'X:\\'</em></div>
</li>
<li class="level2"><div class="li"> relative path starts with <em>'./'</em> or <em>'../'</em></div>
</li>
</ul>
<p>
The relative path are calculated from the application's binary. They should be different for each <acronym title="Operating System">OS</acronym>:
</p>
<ul>
<li class="level1"><div class="li"> under Linux, the binary is installed in <em> /usr/bin </em></div>
</li>
<li class="level2"><div class="li"> under MacOs, binary is inside the Bundle <em> /Path/To/Application.app/Contents/MacOs </em></div>
</li>
<li class="level2"><div class="li"> under Windows, binary is installed in <em>C:\\Path\\To\FreeDiams </em></div>
</li>
</ul>
<p>
It is recommended to use absolute full path inside the <acronym title="Extensible Markup Language">XML</acronym> exhange-in file, so that the calls to FreeDiams will be fully multi-<acronym title="Operating System">OS</acronym>.
</div></p>
</p>
<p>
<p><div class="notetip">When passing ATC codes for allergies or intolerances, you can pass <em>Class ATC Codes</em> which are less than 7 char length.
</div></p>
</p>
<div class="inclmeta level">
<abbr class="published" title="2010-09-27T12:09:11Z">2010/09/27 12:09</abbr>
</div>
</div>
<div class="level3">
</div>
<h3><a name="defaults" id="defaults">Defaults</a></h3>
<div class="level3">
<ul>
<li class="level1"><div class="li"> <em>–exchange-format</em> = <em>html_xml</em></div>
</li>
<li class="level1"><div class="li"> <em>Ui</em> : prescriber</div>
</li>
<li class="level1"><div class="li"> <em>blockPatientData</em> = 0</div>
</li>
<li class="level1"><div class="li"> <em>ConfigFile</em> : will use the default one (in your home path). </div>
</li>
</ul>
</div>
<h2><a name="the_out_exchange_file" id="the_out_exchange_file">The "out" exchange file</a></h2>
<div class="level2">
<p>
When an exchange file is notified, FreeDiams tries to read
the file contents and to retrieve data from the prescription and process them (interactions, allergies…).<br/>
At the close of the application, the prescription is automatically stored in the exchange format <acronym title="Extensible Markup Language">XML</acronym> (user does not need to save before quitting).
</p>
<p>
When the –medintux is notified in the command line, the format of the paging file is specific to MedinTux. <br/>
The contents of the 'out' exchange file is a mix between <acronym title="HyperText Markup Language">HTML</acronym> and <acronym title="Extensible Markup Language">XML</acronym>.
</p>
</div>
<h3><a name="file_format" id="file_format">File format</a></h3>
<div class="level3">
</div>
<h4><a name="formathtml_xml" id="formathtml_xml">Format: html_xml</a></h4>
<div class="level4">
<p>
Till v0.4.0, the out exchange file is structured like this.
</p>
<pre class="code html4strict"><span class="sc2"><<a href="http://december.com/html/4/element/html.html"><span class="kw2">html</span></a>></span>
...
<span class="sc2"><<a href="http://december.com/html/4/element/body.html"><span class="kw2">body</span></a>></span>
<span class="sc2"><<a href="http://december.com/html/4/element/a.html"><span class="kw2">a</span></a> <span class="kw3">href</span><span class="sy0">=</span><span class="st0">"FreeDiamsEncodedPrescription:base64FreeDiamsXmlencoded"</span>></span>
... (full HTML prescription)
<span class="sc2"><<span class="sy0">/</span><a href="http://december.com/html/4/element/a.html"><span class="kw2">a</span></a>></span>
<span class="sc2"><<span class="sy0">/</span><a href="http://december.com/html/4/element/body.html"><span class="kw2">body</span></a>></span>
<span class="sc2"><<span class="sy0">/</span><a href="http://december.com/html/4/element/html.html"><span class="kw2">html</span></a>></span></pre>
<p>
For versions upper or egal to 0.4.0 :
</p>
<pre class="code html4strict"><span class="sc2"><<a href="http://december.com/html/4/element/html.html"><span class="kw2">html</span></a>></span>
...
<span class="sc2"><<a href="http://december.com/html/4/element/meta.html"><span class="kw2">meta</span></a> <span class="kw3">name</span><span class="sy0">=</span><span class="st0">"FreeDiams"</span> <span class="kw3">content</span><span class="sy0">=</span><span class="st0">"FreeDiamsEncodedPrescription:base64FreeDiamsXmlencoded"</span><span class="sy0">/</span>></span>
<span class="sc2"><<a href="http://december.com/html/4/element/body.html"><span class="kw2">body</span></a>></span>
... (full HTML prescription)
<span class="sc2"><<span class="sy0">/</span><a href="http://december.com/html/4/element/body.html"><span class="kw2">body</span></a>></span>
<span class="sc2"><<span class="sy0">/</span><a href="http://december.com/html/4/element/html.html"><span class="kw2">html</span></a>></span></pre>
</div>
<h4><a name="formatxml" id="formatxml">Format: xml</a></h4>
<div class="level4">
<p>
The <acronym title="Extensible Markup Language">XML</acronym> content of the exchange out file depends on the editing mode of FreeDiams. The content is described in the <a href="prescription_io.html" class="wikilink1" title="en:manuals:freediams:prescription_io">prescription file format chapter</a>.
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