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/usr/src/gcc-4.6/debian/patches/gcc-system-root.diff is in gcc-4.6-source 4.6.4-6ubuntu2.

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# DP: Remove trailing slash from system root directory

--- a/src/gcc/incpath.c
+++ b/src/gcc/incpath.c
@@ -172,7 +172,15 @@
 
 	  /* Should this directory start with the sysroot?  */
 	  if (sysroot && p->add_sysroot)
-	    str = concat (sysroot, p->fname, NULL);
+	    {
+	      char *sysroot_no_trailing_dir_separator = xstrdup (sysroot);
+	      size_t sysroot_len = strlen (sysroot);
+
+	      if (sysroot_len > 0 && sysroot[sysroot_len - 1] == DIR_SEPARATOR)
+		sysroot_no_trailing_dir_separator[sysroot_len - 1] = '\0';
+	      str = concat (sysroot_no_trailing_dir_separator, p->fname, NULL);
+	      free (sysroot_no_trailing_dir_separator);
+	    }
 	  else if (!p->add_sysroot && relocated
 		   && strncmp (p->fname, cpp_PREFIX, cpp_PREFIX_len) == 0)
 	    {
--- a/src/gcc/gcc.c
+++ b/src/gcc/gcc.c
@@ -2440,9 +2440,17 @@
 
   if (target_system_root)
     {
+      char *sysroot_no_trailing_dir_separator = xstrdup (target_system_root);
+      size_t sysroot_len = strlen (target_system_root);
+
+      if (sysroot_len > 0
+	  && target_system_root[sysroot_len - 1] == DIR_SEPARATOR)
+	sysroot_no_trailing_dir_separator[sysroot_len - 1] = '\0';
+
       if (target_sysroot_suffix)
 	  prefix = concat (target_sysroot_suffix, prefix, NULL);
-      prefix = concat (target_system_root, prefix, NULL);
+      prefix = concat (sysroot_no_trailing_dir_separator, prefix, NULL);
+      free (sysroot_no_trailing_dir_separator);
 
       /* We have to override this because GCC's notion of sysroot
 	 moves along with GCC.  */