This file is indexed.

/usr/share/perl5/Globus/GRAM/JobDescription.pm is in globus-gram-job-manager-scripts 5.0-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
#
# Globus::GRAM::JobDescription
#
# CVS Information
#     $Source: /home/globdev/CVS/globus-packages/gram/jobmanager/scripts/JobDescription.pm.in,v $
#     $Date: 2013/09/06 19:58:46 $
#     $Revision: 1.4.6.1 $
#     $Author: bester $

my ($prefix, $exec_prefix, $libdir, $perlmoduledir);
my ($sbindir, $bindir, $includedir, $datarootdir,
    $datadir, $libexecdir, $sysconfdir, $sharedstatedir,
    $localstatedir, $aclocaldir);
BEGIN
{
    if (exists $ENV{GLOBUS_LOCATION})
    {
        $prefix = $ENV{GLOBUS_LOCATION};
    }
    else
    {
        $prefix = "/usr";
    }

    $exec_prefix = "${prefix}";
    $libdir = "${prefix}/lib";
    $sbindir = "${exec_prefix}/sbin";
    $bindir = "${exec_prefix}/bin";
    $includedir = "${prefix}/include/globus";
    $datarootdir = "${prefix}/share";
    $datadir = "${datarootdir}";
    $perlmoduledir = "/usr/share/perl5";
    $libexecdir = "${datadir}/globus";
    $sysconfdir = "/etc";
    $sharedstatedir = "/var/lib";
    $localstatedir = "/var";
    $aclocaldir = "${datadir}/globus/aclocal";

    if (exists $ENV{GPT_LOCATION})
    {
        unshift(@INC, "$ENV{GPT_LOCATION}/lib/perl");
    }

    unshift(@INC, "${perlmoduledir}");
}

use Globus::Core::Paths;

=head1 NAME

Globus::GRAM::JobDescription - GRAM Job Description
Globus::GRAM::DefaultHandlingJobDescription - GRAM Job Description with relative path handling

=head1 SYNOPSIS

    use Globus::GRAM::JobDescription;

    $hash = { executable => [ '/bin/echo' ], arguments => [ 'hello' ] };
    $description = new Globus::GRAM::JobDescription($filename);
    $description = new Globus::GRAM::JobDescription($hash);
    $executable = $description->executable();
    $description->add($new_attribute, $new_value);
    $description->save();
    $description->save($filename);
    $description->print_recursive($file_handle);

=head1 DESCRIPTION

This object contains the parameters of a job request in a simple
object wrapper. The object may be queried to determine the value of
any RSL parameter, may be updated with new parameters, and may be saved
in the filesystem for later use.

=head2 Methods

=over 4

=cut

package Globus::GRAM::JobDescription;

=item new Globus::GRAM::JobDescription(I<$filename>)

A JobDescription is constructed from a 
file consisting of a Perl hash of parameter => array mappings. Every
value in the Job Description is stored internally as an array, even single
literals, similar to the way an RSL tree is parsed in C. An example of such
a file is

    $description =
    {
	executable  => [ '/bin/echo' ], 
	arguments   => [ 'hello', 'world' ],
	environment => [
	                   [
			       'GLOBUS_GRAM_JOB_CONTACT',
			       'https://globus.org:1234/2345/4332'
			   ]
		       ]
    };

which corresponds to the rsl fragment

    &(executable  = /bin/echo)
     (arguments   = hello world)
     (environment =
         (GLOBUS_GRAM_JOB_CONTACT 'https://globus.org:1234/2345/4332')
     )

When the library_path RSL attribute is specified, this object modifies
the environment RSL attribute value to append its value to any system specific
variables.

=cut

sub new
{
    my $proto = shift;
    my $class = ref($proto) || $proto;
    my $desc = shift;
    my $self = {};

    if (defined ($desc))
    {
        if ( ref ( $desc ) eq "HASH" )
        {
            foreach my $Key ( keys %{$desc} )
            {
                $self->{$Key} = $desc->{$Key};
            }
        }
        else
        {
            my $desc_fn = $desc;
            $self = require "$desc_fn";
            $self->{_description_file} = $desc_fn;
        }
    }

    bless $self, $class;

    if ($self->expand_globus_home()) {
        my $home = (getpwuid($<))[7];
        foreach my $key (keys %{$self}) {
            if ($key =~ m/^[^_]/) {
                my $arrayref = $self->{$key};

                for ($i = 0; $i < scalar(@{$arrayref}); $i++) {
                    $arrayref->[$i] =~ s/\${GLOBUS_USER_HOME}/$home/g;
                }
            }
        }
    }
    
    if ($self->expand_globus_location()) {
        my $home;
        if (exists $ENV{GLOBUS_LOCATION})
        {
            $home = $ENV{GLOBUS_LOCATION};
        }
        else
        {
            $home = $Globus::Core::Paths::exec_prefix;
        }
        foreach my $key (keys %{$self}) {
            if ($key =~ m/^[^_]/) {
                my $arrayref = $self->{$key};

                for ($i = 0; $i < scalar(@{$arrayref}); $i++) {
                    $arrayref->[$i] =~ s/\${GLOBUS_LOCATION}/$home/g;
                }
            }
        }
    }      

    $self->fix_library_path_environment();

    return $self;
}

=item $description->I<add>('name', I<$value>);

Add a parameter to a job description. The parameter will be normalized
internally so that the access methods described below will work with
this new parameter. As an example,

    $description->add('new_attribute', $new_value)

will create a new attribute in the JobDescription, which can be accessed
by calling the I<$description->new_attribute>() method.

=cut

sub add
{
    my $self = shift;
    my $attr = shift;
    my $value = shift;

    $attr =~ s/_//g;
    $attr = lc($attr);

    if ( ref($value) eq 'ARRAY' ) {
        $self->{$attr} = $value;
    } else {
        $self->{$attr} = [ $value ];
    }
}

=item I<$value> $description->I<get>('name');

Get a parameter from a job description. As an example,

    $description->get('attribute')

will return the appropriate attribute in the JobDescription by name.

=cut

sub get
{
    my $self = shift;
    my $attr = shift;

    $attr =~ s/_//g;
    $attr = lc($attr);

    return $self->{$attr};
}

=item $description->I<save>([$filename])

Save the JobDescription, including any added parameters, to the file
named by $filename if present, or replacing the file used in constructing
the object.

=cut

sub save
{
    my $self = shift;
    my $filename = shift || "$self->{_description_file}.new";
    local(*OUT);	     	# protect

    if ( open( OUT, '>' . $filename ) ) 
    {
	print OUT '$description = {', "\n";
	foreach ( keys %{$self} ) 
	{
	    print OUT '   \'', $_, '\' => ';
	    $self->print_recursive( \*OUT, $self->{$_} );
	    print OUT ",\n";
	}

	print OUT "};\n";
	close(OUT);

    } else {
	# FIXME: what shall we do, if we cannot open the file?
    }

    if ( exists($self->{_description_file}) )
    {
        if ( $filename eq "$self->{_description_file}.new" )
        {
            rename("$self->{_description_file}.new",
                    $self->{_description_file});
        }
    }

    return 0;
}

=item $description->I<print_recursive>($file_handle)

Write the value of the job description object to the file handle
specified in the argument list.

=cut

sub print_recursive
{
    my $self = shift;
    my $fh = shift;			# with ..::File, \*FILE or *FILE{IO}
    my $value = shift;
    my $first = 1;

    if ( ref($value) eq 'SCALAR' )
    {
	print $fh $value;
    }
    elsif(ref($value) eq 'ARRAY')
    {
	print $fh '[ ';
	foreach (@{$value})
	{
	    print $fh ', ' if (!$first);
	    $first = 0;
	    $self->print_recursive($fh, $_);
	}
	print $fh ' ]';
    }
    elsif(ref($value) eq 'HASH')
    {
	print $fh '(';

	foreach (keys %{$value})
	{
	    print $fh ', ' if (!$first);
	    $first = 0;
	    print $fh "'$_' => ";
	    $self->print_recursive($fh, $value->{$_});
	}

	print $fh ')';
    }
    elsif(!ref($value))
    {
        $value =~ s|'|\\'|g;
	print $fh "'$value'";
    }
    return;
}

=item $description->I<parameter>()

For any parameter defined in the JobDescription can be accessed by calling
the method named by the parameter. The method names are automatically created
when the JobDescription is created, and may be invoked with arbitrary
SillyCaps or underscores. That is, the parameter gram_myjob may be accessed
by the GramMyJob, grammyjob, or gram_my_job method names (and others).

If the attributes does not in this object, then undef will be returned.

In a list context, this returns the list of values associated
with an attribute.

In a scalar context, if the attribute's value consist of a single literal,
then that literal will be returned, otherwise undef will be returned.

For example, from a JobDescription called $d constructed from a
description file containing

    {
	executable => [ '/bin/echo' ],
	arguments  => [ 'hello', 'world' ]
    }

The following will hold:

    $executable = $d->executable()    # '/bin/echo'
    $arguments = $d->arguments()      # undef
    @executable = $d->executable()    # ('/bin/echo')
    @arguments = $d->arguments()      # ('hello', 'world')
    $not_present = $d->not_present()  # undef
    @not_present = $d->not_present()  # ()

To test for existence of a value:

    @not_present = $d->not_present()
    print "Not defined\n" if(!defined($not_present[0]));

=cut

sub AUTOLOAD
{
    use vars qw($AUTOLOAD);
    my $self = shift;
    my $name = $AUTOLOAD;
    $name =~ s/.*://;

    $name =~ s/_//g;
    $name = lc($name);


    if((! ref($self)) ||(! exists($self->{$name})))
    {
	if(wantarray)
	{
	    return ();
	}
	else
	{
	    return undef;
	}
    }
    if(wantarray)
    {
	# Return a list containing the contents of the value array for
	# this attribute.
	# This makes things like $description->environment() act as expected.
	return @{$self->{$name}};
    }
    elsif(scalar(@{$self->{$name}}) == 1 && !ref($self->{$name}[0]))
    {
	# If there is only a single value in the value array for this
	# attribute, return that value
	# This makes things like $description->directory() act as expected.
	return @{$self->{$name}}[0];
    }
    else
    {
	return undef;
    }
}

# Internal method to merge the library_path RSL attribute and any values in the
# environment RSL attribute which explicitly name system library path variables.
# The result will be modifications to the environment RSL attribute value
# with the library_path values appended to any existing system-specific library
# path settings in the original RSL. For example
# if we found 
# &(environment = (LD_LIBRARY_PATH foo))
#  (library_path = bar)
# in the RSL, and LD_LIBRARY_PATH was one of the system-specific library paths
# for this OS, we'll modify the RSL to be
# &(environment = (LD_LIBRARY_PATH foo:bar))
#  (library_path = bar)
# 
# The $library_map values are mostly based on
# http://www.fortran-2000.com/ArnaudRecipes/sharedlib.html
# and also LD_LIBRARY_PATH for some popular BSDs
sub fix_library_path_environment
{
    my $self = shift;
    my @environment = $self->environment();
    my $library_map = {
        'linux' => [ 'LD_LIBRARY_PATH'],
        'hpux' => [ 'SHLIB_PATH', 'LD_LIBRARY_PATH' ],
        'solaris' => [ 'LD_LIBRARY_PATH', 'LD_LIBRARY_PATH_64' ],
        'aix' => [ 'LIBPATH' ],
        'irix' => [ 'LD_LIBRARY_PATH', 'LD_LIBRARYN32_PATH', 'LD_LIBRARY64_PATH' ],
        'darwin' => [ 'DYLD_LIBRARY_PATH' ],
        'freebsd' => [ 'LD_LIBRARY_PATH' ],
        'openbsd' => [ 'LD_LIBRARY_PATH' ]
    };
    my $library_path = join(':', $self->library_path());

    # Only bother doing anything if the library_path RSL attribute is 
    # present, and we know something about how the OS finds dynamic libraries
    # $^O is The name of the operating system under which this copy of Perl
    # was built
    if ($library_path ne '' && exists($library_map->{$^O})) {
        foreach my $var (@{$library_map->{$^O}}) {
            # environment is an list of [ $name, $value ] pairs. This pulls
            # out the value that matches the current OS-specific envvar name
            my @libref = grep { $_->[0] eq $var } @environment;

            if (exists $libref[0])
            {
                # user specified both environment=($var ...) and
                # library_path=$library_path so we'll append $library_path
                # to the corresponding environment variable definition
                $libref[0]->[1] .= ":$library_path";
            }
            else
            {
                # user didn't specify both library_path and
                # environment=($var $library_path), so we just add it to the
                # environment
                push(@environment, [$var, $library_path]);
            }
        }
        # @environment is a list of references so modifications above will
        # modify the RSL; however, if we add new references (the else case
        # above), they won't be in the list in this object. 
        $self->add('environment', \@environment);
    }
}

=back

=cut

package Globus::GRAM::DefaultHandlingJobDescription;

our @ISA = qw(Globus::GRAM::JobDescription);

sub directory
{
    my $self = shift;
    my $dir = $self->SUPER::directory();
    if ($dir =~ m|^[^/]|)
    {
        $dir = "$ENV{HOME}/$dir";
    }
    return $dir;
}

sub executable
{
    my $self = shift;
    my $exe = $self->SUPER::executable();
    if (ref($exe) || $exe =~ m|://|) {
        return $exe;
    }
    if ($exe =~ m|^[^/]|)
    {
        $exe = $self->directory() . "/$exe";
    }
    return $exe;
}

sub stdin
{
    my $self = shift;
    my $stdin = $self->SUPER::stdin();
    if (ref $stdin || $stdin =~ m|://|) {
        return $stdin;
    }
    if ($stdin =~ m|^[^/]|)
    {
        $stdin = $self->directory() . "/$stdin";
    }
    return $stdin;
}

sub stdout
{
    my $self = shift;
    my @stdout = $self->SUPER::stdout();

    if (scalar(@stdout) > 1 || ref($stdout[0])) {
        return @stdout;
    }
    my $stdout = $stdout[0];
    if (ref $stdout || $stdout =~ m|://|) {
        return $stdout;
    }
    if ($stdout =~ m|^[^/]|)
    {
        $stdout = $self->directory() . "/$stdout";
    }
    return $stdout;
}

sub stderr
{
    my $self = shift;
    my @stderr = $self->SUPER::stderr();
    if (scalar(@stderr) > 1 || ref($stderr[0])) {
        return @stderr;
    }
    my $stderr = $stderr[0];
    if (ref $stderr || $stderr =~ m|://|) {
        return $stderr;
    }
    if ($stderr =~ m|^[^/]|)
    {
        $stderr = $self->directory() . "/$stderr";
    }
    return $stderr;
}

sub max_cpu_time
{
    my $self = shift;
    my $max_cpu_time = $self->SUPER::max_cpu_time();
    if (! $max_cpu_time)
    {
        $max_cpu_time = $self->max_time();
    }
    $max_cpu_time = 0 if (! $max_cpu_time);
    return $max_cpu_time;
}

sub max_wall_time
{
    my $self = shift;
    my $max_wall_time = $self->SUPER::max_wall_time();
    if (! $max_wall_time)
    {
        $max_wall_time = $self->max_time();
    }
    
    $max_wall_time = 0 if (! $max_wall_time);

    return $max_wall_time;
}

sub get($$)
{
    my $self = shift;
    my $name = shift;

    $name =~ s/_//g;
    $name = lc($name);

    if ($name eq 'directory') {
        return $self->directory();
    } elsif ($name eq 'executable') {
        return $self->executable(); 
    } elsif ($name eq 'stdin') {
        return $self->stdin();
    } elsif ($name eq 'stdout') {
        return $self->stdout();
    } elsif ($name eq 'stderr') {
        return $self->stderr();
    } elsif ($name eq 'max_cpu_time') {
        return $self->max_cpu_time();
    } elsif ($name eq 'max_wall_time') {
        return $self->max_wall_time();
    } else {
        return $self->SUPER::get($name);
    }
}

1;

__END__

# vim: filetype=perl :