This file is indexed.

/var/lib/gnumed/server/sql/gmClin-Vaccination-static.sql is in gnumed-server 19.6-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
-- Project: GNUmed - vaccination related tables
-- ===================================================================
-- $Source: /home/ncq/Projekte/cvs2git/vcs-mirror/gnumed/gnumed/server/sql/gmClin-Vaccination-static.sql,v $
-- $Id: gmClin-Vaccination-static.sql,v 1.5 2006-03-06 09:42:46 ncq Exp $
-- license: GPL v2 or later
-- author: Ian Haywood, Karsten Hilbert, Richard Terry

-- ===================================================================
-- force terminate + exit(3) on errors if non-interactive
\set ON_ERROR_STOP 1

-- ============================================
-- vaccination tables
-- ============================================
create table clin.vacc_indication (
	id serial primary key,
	description text unique not null
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.vacc_route (
	id serial primary key,
	abbreviation text unique not null,
	description text unique not null
) inherits (audit.audit_fields);

-- --------------------------------------------
-- FIXME: this table should eventually point to entries
-- FIXME: in the clin.* drug data cache table
create table clin.vaccine (
	pk serial primary key,
	id_route integer
		not null
		references clin.vacc_route(id)
		default 1,
	trade_name text unique not null,
	short_name text not null,
	is_live boolean
		not null
		default false,
	min_age interval
		not null
		check(min_age between '1 second'::interval and '150 years'::interval),
	max_age interval
		not null
		default '5555 years'::interval
		check (
			(max_age between min_age and '150 years'::interval)
				or
			(max_age = '5555 years'::interval)
		),
	comment text,
	unique (trade_name, short_name)
) inherits (audit.audit_fields);

-- FIXME: this table eventually needs to go into
-- FIXME: stock inventory tracking
create table clin.vaccine_batches (
	pk serial primary key,
	fk_vaccine integer
		not null
		references clin.vaccine(pk)
		on update cascade
		on delete cascade,
	batch_no text
		unique
		not null
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.lnk_vaccine2inds (
	id serial primary key,
	fk_vaccine integer
		not null
		references clin.vaccine(pk)
		on delete cascade
		on update cascade,
	fk_indication integer
		not null
		references clin.vacc_indication(id)
		on delete cascade
		on update cascade,
	unique (fk_vaccine, fk_indication)
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.vaccination_course (
	pk serial primary key,
	fk_recommended_by integer
		default null,
	fk_indication integer
		not null
		references clin.vacc_indication(id)
		on update cascade
		on delete restrict,
	is_active boolean
		not null
		default true,
	comment text
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.vaccination_course_constraint (
	pk serial primary key,
	description text
		unique
		not null
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.lnk_constraint2vacc_course (
	pk serial primary key,
	fk_vaccination_course integer
		not null
		references clin.vaccination_course(pk)
		on update cascade
		on delete cascade,
	fk_constraint integer
		not null
		references clin.vaccination_course_constraint(pk)
		on update cascade
		on delete cascade,
	unique (fk_vaccination_course, fk_constraint)
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.vaccination_schedule (
	pk serial primary key,
	name text
		unique
		not null,
	comment text
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.lnk_vaccination_course2schedule (
	pk serial primary key,
	fk_course integer
		unique
		not null
		references clin.vaccination_course(pk)
		on update cascade
		on delete restrict,
	fk_schedule integer
		not null
		references clin.vaccination_schedule(pk)
		on update cascade
		on delete cascade
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.lnk_pat2vaccination_course (
	pk serial primary key,
	fk_patient integer
		not null
		references clin.xlnk_identity(xfk_identity)
		on update cascade
		on delete cascade,
	fk_course integer
		not null
		references clin.vaccination_course(pk)
		on update cascade
		on delete restrict,
	unique(fk_patient, fk_course)
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.vaccination_definition (
	id serial primary key,
	fk_course integer
		not null
		references clin.vaccination_course(pk)
		on delete cascade
		on update cascade,
	is_booster boolean
		not null
		default false,
	seq_no integer
		default null,
	min_age_due interval
		not null
		check (min_age_due between '1 second'::interval and '150 years'::interval),
	max_age_due interval
		not null
		default '5555'::interval
		check (
			(max_age_due between min_age_due and '150 years'::interval)
				or 
			(max_age_due = '5555'::interval)
		),
	min_interval interval
		default null,
	comment text,
	unique(fk_course, seq_no)
--	,unique(fk_course, is_booster)
) inherits (audit.audit_fields);

-- --------------------------------------------
create table clin.vaccination (
	id serial primary key,
	-- isn't this redundant ?
	fk_patient integer
		not null
		references clin.xlnk_identity(xfk_identity)
		on update cascade
		on delete restrict,
	fk_provider integer
		not null,
	fk_vaccine integer
		not null
		references clin.vaccine(pk)
		on delete restrict
		on update cascade,
	site text
		default 'not recorded',
	batch_no text
		not null
		default 'not recorded',
	unique (fk_patient, fk_vaccine, clin_when)
) inherits (clin.clin_root_item);
-- Richard tells us that "refused" should go into progress note

alter table clin.vaccination add foreign key (fk_encounter)
		references clin.encounter(pk)
		on update cascade
		on delete restrict;
alter table clin.vaccination add foreign key (fk_episode)
		references clin.episode(pk)
		on update cascade
		on delete restrict;
alter table clin.vaccination alter column soap_cat set default 'p';

-- --------------------------------------------
-- this table will be even larger than vaccination ...
--create table clin.lnk_vacc2vacc_def (
--	pk serial primary key,
--	fk_vaccination integer
--		not null
--		references clin.vaccination(id)
--		on delete cascade
--		on update cascade,
--	fk_vacc_def integer
--		not null
--		references clin.vacc_def(id)
--		on delete restrict
--		on update cascade,
--	unique (fk_vaccination, fk_vacc_def)
--) inherits (audit.audit_fields);

--comment on column clin.lnk_vacc2vacc_def.fk_vacc_def is
--	'the vaccination event a particular
--	 vaccination is supposed to cover, allows to
--	 link out-of-band vaccinations into courses,
--	 not currently used';

-- ===================================================================
-- do simple schema revision tracking
select log_script_insertion('$RCSfile: gmClin-Vaccination-static.sql,v $', '$Revision: 1.5 $');

-- ===================================================================
-- $Log: gmClin-Vaccination-static.sql,v $
-- Revision 1.5  2006-03-06 09:42:46  ncq
-- - spell out more table names
-- - general cleanup
--
-- Revision 1.4  2006/03/04 16:14:10  ncq
-- - audit many more tables
-- - rename previous vacc_regime to vaccination_course
-- - add real vaccination_schedule and lnk_vaccination_course2schedule
--
-- Revision 1.3  2006/02/27 11:23:26  ncq
-- - better constrain min_age/max_age in schedule and vaccine
-- - use "5555 years" not NULL to mean infinite age, PG infinite::interval is in the works
--
-- Revision 1.2  2006/02/19 13:45:05  ncq
-- - move the rest of the dynamic vacc stuff from gmClinicalViews.sql
--   into gmClin-Vaccination-dynamic.sql
-- - add vaccination schedule constraint enumeration data
-- - add is_active to clin.vacc_regime
-- - add clin.vacc_regime_constraint
-- - add clin.lnk_constraint2vacc_reg
-- - proper grants
--
-- Revision 1.1  2006/02/08 15:15:39  ncq
-- - factor our vaccination stuff into its own set of files
-- - remove clin.lnk_vacc_ind2code in favour of clin.coded_term usage
-- - improve comments as discussed on the list
--
--