/usr/share/gromacs/shell-specific/GMXRC.csh is in gromacs-data 4.6.5-1build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 | # csh/tcsh configuration file for Gromacs.
# First we remove previous Gromacs stuff from paths
# by selecting everything else.
# Removal is not 100% necessary, but very useful when we
# repeatedly switch between gmx versions in a shell.
# zero possibly unset vars to avoid warnings
if (! $?LD_LIBRARY_PATH) setenv LD_LIBRARY_PATH ""
if (! $?PKG_CONFIG_PATH) setenv PKG_CONFIG_PATH ""
if (! $?PATH) setenv PATH ""
if (! $?MANPATH) setenv MANPATH ""
if (! $?GMXLDLIB) setenv GMXLDLIB ""
if (! $?GMXBIN) setenv GMXBIN ""
if (! $?GMXMAN) setenv GMXMAN ""
# remove previous gromacs part from ld_library_path
set tmppath = ""
foreach i ( `echo $LD_LIBRARY_PATH | sed "s/:/ /g"` )
if ( "$i" != "$GMXLDLIB" ) then
if ("${tmppath}" == "") then
set tmppath = "$i"
else
set tmppath = "${tmppath}:$i"
endif
endif
end
setenv LD_LIBRARY_PATH $tmppath
# remove previous gromacs part from PKG_CONFIG_PATH
set tmppath = ""
foreach i ( `echo $PKG_CONFIG_PATH | sed "s/:/ /g"` )
if ( "$i" != "$GMXLDLIB/pkgconfig" ) then
if ("${tmppath}" == "") then
set tmppath = "$i"
else
set tmppath = "${tmppath}:$i"
endif
endif
end
setenv PKG_CONFIG_PATH $tmppath
# remove gromacs stuff from binary path
set tmppath = ""
foreach i ( `echo $PATH | sed "s/:/ /g"` )
if ( "$i" != "$GMXBIN" ) then
if ("${tmppath}" == "") then
set tmppath = "$i"
else
set tmppath = "${tmppath}:$i"
endif
endif
end
setenv PATH $tmppath
# and remove stuff from manual path
set tmppath = ""
foreach i ( `echo $MANPATH | sed "s/:/ /g"` )
if ( "$i" != "$GMXMAN" ) then
if ("${tmppath}" == "") then
set tmppath = "$i"
else
set tmppath = "${tmppath}:$i"
endif
endif
end
setenv MANPATH $tmppath
##########################################################
# This is the real configuration part. We save the Gromacs
# things in separate vars, so we can remove them later.
# If you move gromacs, change the next four line.
##########################################################
setenv GMXBIN /usr/bin
setenv GMXLDLIB /usr/lib
setenv GMXMAN /usr/share/man
setenv GMXDATA /usr/share/gromacs
#make them begin with :
if ($?LD_LIBRARY_PATH) setenv LD_LIBRARY_PATH ":${LD_LIBRARY_PATH}"
if ($?PKG_CONFIG_PATH) setenv PKG_CONFIG_PATH ":${PKG_CONFIG_PATH}"
#path is never empty
setenv PATH ${GMXBIN}:${PATH}
setenv LD_LIBRARY_PATH ${GMXLDLIB}${LD_LIBRARY_PATH}
setenv PKG_CONFIG_PATH ${GMXLDLIB}/pkgconfig${PKG_CONFIG_PATH}
#debian/ubuntu needs a : at the end
setenv MANPATH ${GMXMAN}:${MANPATH}
setenv GMXFONT 10x20
# Read completions if we understand it (i.e. have tcsh)
if { complete >& /dev/null } then
if ( -f $GMXBIN/completion.csh ) source $GMXBIN/completion.csh
endif
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