/usr/share/gromacs/top/xlateat.dat is in gromacs-data 4.6.5-1build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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ILE CD1 CD
ILE HD11 HD1
ILE HD12 HD2
ILE HD13 HD3
HOH O OW
HOH OW1 OW
HO4 O OW
HO4 OW1 OW
HO5 O OW
HO5 OW1 OW
HEME N_A NA
HEME N_B NB
HEME N_C NC
HEME N_D ND
protein O1 O
protein O2 OXT
protein OT1 O
protein OT2 OXT
protein OT OXT
protein O' O
protein O'' OXT
protein OC1 O
protein OC2 OXT
protein HN H
protein HT1 H1
protein HT2 H2
protein HT3 H3
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