/usr/share/perl5/Bio/Search/DatabaseI.pm is in libbio-perl-perl 1.6.923-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 | #-----------------------------------------------------------------
#
# BioPerl module Bio::Search::DatabaseI
#
# Please direct questions and support issues to <bioperl-l@bioperl.org>
#
# Cared for by Steve Chervitz <sac@bioperl.org>
#
# You may distribute this module under the same terms as perl itself
#-----------------------------------------------------------------
# POD documentation - main docs before the code
=head1 NAME
Bio::Search::DatabaseI - Interface for a database used in a sequence search
=head1 SYNOPSIS
Bio::Search::DatabaseI objects should not be instantiated since this
module defines a pure interface.
Given an object that implements the Bio::Search::DatabaseI interface,
you can do the following things with it:
$name = $db->name();
$date = $db->date();
$num_letters = $db->letters();
$num_entries = $db->entries();
=head1 DESCRIPTION
This module defines methods for an object that provides metadata
information about a database used for sequence searching.
=head1 FEEDBACK
=head2 Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
=head2 Support
Please direct usage questions or support issues to the mailing list:
I<bioperl-l@bioperl.org>
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
=head2 Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
Steve Chervitz E<lt>sac@bioperl.orgE<gt>
See L<the FEEDBACK section | FEEDBACK> for where to send bug reports and comments.
=head1 COPYRIGHT
Copyright (c) 2001 Steve Chervitz. All Rights Reserved.
=head1 DISCLAIMER
This software is provided "as is" without warranty of any kind.
=cut
=head1 APPENDIX
The rest of the documentation details each of the object methods.
=cut
# Let the code begin...
package Bio::Search::DatabaseI;
use strict;
use base qw(Bio::Root::RootI);
=head2 name
Usage : $name = $db->name();
Purpose : Get the name of the database searched.
Returns : String
Argument : n/a
=cut
sub name {
my $self = shift;
$self->throw_not_implemented;
}
=head2 date
Usage : $date = $db->date();
Purpose : Get the creation date of the queried database.
Returns : String
Argument : n/a
=cut
sub date {
my $self = shift;
$self->throw_not_implemented;
}
=head2 letters
Usage : $num_letters = $db->letters();
Purpose : Get the number of letters in the queried database.
Returns : Integer
Argument : n/a
=cut
sub letters {
my $self = shift;
$self->throw_not_implemented;
}
=head2 entries
Usage : $num_entries = $db->entries();
Purpose : Get the number of entries in the queried database.
Returns : Integer
Argument : n/a
=cut
sub entries {
my $self = shift;
$self->throw_not_implemented;
}
1;
|