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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_03) on Wed Jun 27 23:50:40 UTC 2012 -->
<title>Overview List</title>
<meta name="date" content="2012-06-27">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
<div class="indexHeader"><a href="allclasses-frame.html" target="packageFrame">All Classes</a></div>
<div class="indexContainer">
<h2 title="Packages">Packages</h2>
<ul title="Packages">
<li><a href="pal/algorithmics/package-frame.html" target="packageFrame">pal.algorithmics</a></li>
<li><a href="pal/alignment/package-frame.html" target="packageFrame">pal.alignment</a></li>
<li><a href="pal/coalescent/package-frame.html" target="packageFrame">pal.coalescent</a></li>
<li><a href="pal/datatype/package-frame.html" target="packageFrame">pal.datatype</a></li>
<li><a href="pal/distance/package-frame.html" target="packageFrame">pal.distance</a></li>
<li><a href="pal/eval/package-frame.html" target="packageFrame">pal.eval</a></li>
<li><a href="pal/gui/package-frame.html" target="packageFrame">pal.gui</a></li>
<li><a href="pal/io/package-frame.html" target="packageFrame">pal.io</a></li>
<li><a href="pal/math/package-frame.html" target="packageFrame">pal.math</a></li>
<li><a href="pal/mep/package-frame.html" target="packageFrame">pal.mep</a></li>
<li><a href="pal/misc/package-frame.html" target="packageFrame">pal.misc</a></li>
<li><a href="pal/popgen/package-frame.html" target="packageFrame">pal.popgen</a></li>
<li><a href="pal/statistics/package-frame.html" target="packageFrame">pal.statistics</a></li>
<li><a href="pal/substmodel/package-frame.html" target="packageFrame">pal.substmodel</a></li>
<li><a href="pal/supgma/package-frame.html" target="packageFrame">pal.supgma</a></li>
<li><a href="pal/tree/package-frame.html" target="packageFrame">pal.tree</a></li>
<li><a href="pal/treesearch/package-frame.html" target="packageFrame">pal.treesearch</a></li>
<li><a href="pal/util/package-frame.html" target="packageFrame">pal.util</a></li>
<li><a href="pal/xml/package-frame.html" target="packageFrame">pal.xml</a></li>
</ul>
</div>
<p> </p>
</body>
</html>
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