/etc/mobyle/programs/Env/bowtie_db.xml is in mobyle-programs 5.1.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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<velem undef="1">
<label>Choose a genome</label>
<value>null</value>
</velem>
<velem>
<label>Upload a genome</label>
<value>upload</value>
</velem>
<velem>
<label>Mus musculus - mm9</label>
<value>/iGenomes/Mus_musculus/UCSC/mm9/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Bos taurus - bosTau4</label>
<value>/iGenomes/Bos_taurus/UCSC/bosTau4/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Caenorhabditis elegans - ce6</label>
<value>/iGenomes/Caenorhabditis_elegans/UCSC/ce6/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Canis familiaris - canFam2</label>
<value>/iGenomes/Canis_familiaris/UCSC/canFam2/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Drosophila melanogaster - dm3</label>
<value>/iGenomes/Drosophila_melanogaster/UCSC/dm3/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Equus caballus - equCab2</label>
<value>/iGenomes/Equus_caballus/UCSC/equCab2/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Gallus gallus - galGal3</label>
<value>/iGenomes/Gallus_gallus/UCSC/galGal3/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Homo sapiens - hg18</label>
<value>/iGenomes/Homo_sapiens/UCSC/hg18/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Homo sapiens - hg19</label>
<value>/iGenomes/Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Pan troglodytes - panTro2</label>
<value>/iGenomes/Pan_troglodytes/UCSC/panTro2/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Rattus norvegicus - rn4</label>
<value>/iGenomes/Rattus_norvegicus/UCSC/rn4/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Saccharomyces cerevisiae - sacCer2</label>
<value>/iGenomes/Saccharomyces_cerevisiae/UCSC/sacCer2/Sequence/BowtieIndex/genome</value>
</velem>
<velem>
<label>Sus scrofa - susScr2</label>
<value>/iGenomes/Sus_scrofa/UCSC/susScr2/Sequence/BowtieIndex/genome</value>
</velem>
</vlist>
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