/var/lib/mobyle/programs/blast2seqid.xml is in mobyle-programs 5.1.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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<!-- XML Authors: Bertrand Neron, -->
<!-- 'Biological Software and Databases' Group, Institut Pasteur, Paris. -->
<!-- Distributed under LGPLv2 Licence. Please refer to the COPYING.LIB document. -->
<program>
<head>
<name>blast2seqid</name>
<version>1.0</version>
<doc>
<title>blast2seqid</title>
<description>
<text lang="en">Extract sequence Ids from blast hits (in USA format)</text>
</description>
<authors>Bertrand Néron</authors>
<sourcelink>https://projets.pasteur.fr/projects/list_files/blast2usa</sourcelink>
<homepagelink>https://projets.pasteur.fr/projects/show/blast2usa</homepagelink>
<comment>
<text lang="en">
Extract the Identifier and Data Bank of the hits
from the summary of a blast report ( in text format -m 0-6 )
The result is in USA list format.
</text>
</comment>
</doc>
<category>database:search:display</category>
<command>blast2usa</command>
</head>
<parameters>
<parameter ismandatory="1" issimple="1">
<name>infile</name>
<prompt lang="en">BLAST text report</prompt>
<type>
<datatype>
<class>BlastTextReport</class>
<superclass>Report</superclass>
</datatype>
</type>
<format>
<code proglang="perl">" $value"</code>
<code proglang="python">" "+str(value)</code>
</format>
<argpos>40</argpos>
<comment>
<text lang="en">
A blast output in pairwise format ( option -m 0 default ).
</text>
</comment>
</parameter>
<paragraph>
<name>output</name>
<prompt lang="en">Output options</prompt>
<parameters>
<parameter>
<name>From</name>
<prompt lang="en">ignore the hits until the hit n (integer)</prompt>
<type>
<datatype>
<class>Integer</class>
</datatype>
</type>
<format>
<code proglang="perl">(defined $value) ? " --from $value" : ""</code>
<code proglang="python">( "" , " --from " + str(value) )[value is not None]</code>
</format>
<argpos>10</argpos>
</parameter>
<parameter>
<name>To</name>
<prompt lang="en">ignore the hits after the hit n (integer)</prompt>
<type>
<datatype>
<class>Integer</class>
</datatype>
</type>
<format>
<code proglang="perl">(defined $value) ? " --to $value" : ""</code>
<code proglang="python">( "" , " --to " + str(value) )[value is not None]</code>
</format>
<argpos>20</argpos>
</parameter>
</parameters>
</paragraph>
<parameter isstdout="1">
<name>id_list</name>
<prompt lang="en">hits identifier</prompt>
<type>
<datatype>
<class>GenesId</class>
<superclass>AbstractText</superclass>
</datatype>
<dataFormat>USAList</dataFormat>
</type>
<filenames>
<code proglang="perl">"blast2seqid.out"</code>
<code proglang="python">"blast2seqid.out"</code>
</filenames>
</parameter>
</parameters>
</program>
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