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Class Hierarchy (NeoBio API)
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<TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
<TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Package</FONT> </TD>
<TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
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<B><EM>NeoBio</EM> API</B></EM>
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<H2>
Hierarchy For All Packages</H2>
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<DT><B>Package Hierarchies:</B><DD><A HREF="neobio/alignment/package-tree.html">neobio.alignment</A>, <A HREF="neobio/gui/package-tree.html">neobio.gui</A>, <A HREF="neobio/textui/package-tree.html">neobio.textui</A></DL>
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<H2>
Class Hierarchy
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<LI TYPE="circle">class java.lang.Object<UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/AlignmentBlock.html"><B>AlignmentBlock</B></A><UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/LocalAlignmentBlock.html"><B>LocalAlignmentBlock</B></A></UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/CharSequence.html"><B>CharSequence</B></A><LI TYPE="circle">class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
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<LI TYPE="circle">class java.awt.Container<UL>
<LI TYPE="circle">class javax.swing.JComponent (implements java.io.Serializable)
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<LI TYPE="circle">class javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
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<LI TYPE="circle">class neobio.gui.<A HREF="neobio/gui/PairwiseAlignmentFrame.html"><B>PairwiseAlignmentFrame</B></A></UL>
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<LI TYPE="circle">class java.awt.Window (implements javax.accessibility.Accessible)
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<LI TYPE="circle">class java.awt.Dialog<UL>
<LI TYPE="circle">class javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
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<LI TYPE="circle">class neobio.gui.<A HREF="neobio/gui/AboutDialog.html"><B>AboutDialog</B></A></UL>
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<LI TYPE="circle">class java.awt.Frame (implements java.awt.MenuContainer)
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<LI TYPE="circle">class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
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<LI TYPE="circle">class neobio.gui.<A HREF="neobio/gui/NeoBio.html"><B>NeoBio</B></A></UL>
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<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/Factor.html"><B>Factor</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/FactorSequence.html"><B>FactorSequence</B></A><LI TYPE="circle">class neobio.textui.<A HREF="neobio/textui/NeoBio.html"><B>NeoBio</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/OutMatrix.html"><B>OutMatrix</B></A> (implements neobio.alignment.<A HREF="neobio/alignment/Matrix.html">Matrix</A>)
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/PairwiseAlignment.html"><B>PairwiseAlignment</B></A> (implements java.io.Serializable)
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/PairwiseAlignmentAlgorithm.html"><B>PairwiseAlignmentAlgorithm</B></A><UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/CrochemoreLandauZivUkelson.html"><B>CrochemoreLandauZivUkelson</B></A><UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment.html"><B>CrochemoreLandauZivUkelsonGlobalAlignment</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment.html"><B>CrochemoreLandauZivUkelsonLocalAlignment</B></A></UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/NeedlemanWunsch.html"><B>NeedlemanWunsch</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/SmithWaterman.html"><B>SmithWaterman</B></A></UL>
<LI TYPE="circle">class neobio.textui.<A HREF="neobio/textui/RandomFactorSequenceGenerator.html"><B>RandomFactorSequenceGenerator</B></A><LI TYPE="circle">class neobio.textui.<A HREF="neobio/textui/RandomSequenceGenerator.html"><B>RandomSequenceGenerator</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/ScoringScheme.html"><B>ScoringScheme</B></A><UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/BasicScoringScheme.html"><B>BasicScoringScheme</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/ScoringMatrix.html"><B>ScoringMatrix</B></A></UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/Smawk.html"><B>Smawk</B></A><LI TYPE="circle">class java.lang.Throwable (implements java.io.Serializable)
<UL>
<LI TYPE="circle">class java.lang.Exception<UL>
<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/IncompatibleScoringSchemeException.html"><B>IncompatibleScoringSchemeException</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/InvalidScoringMatrixException.html"><B>InvalidScoringMatrixException</B></A><LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/InvalidSequenceException.html"><B>InvalidSequenceException</B></A></UL>
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<LI TYPE="circle">class neobio.alignment.<A HREF="neobio/alignment/Trie.html"><B>Trie</B></A></UL>
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<H2>
Interface Hierarchy
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<LI TYPE="circle">interface neobio.alignment.<A HREF="neobio/alignment/Matrix.html"><B>Matrix</B></A></UL>
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<TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
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