This file is indexed.

/usr/include/gamera/plugins/transformation.hpp is in python-gamera-dev 3.3.3-2ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
/*
 *
 * Copyright (C) 2001-2005 Ichiro Fujinaga, Michael Droettboom, Karl MacMillan
 *               2010      Christoph Dalitz
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
 */

#ifndef cd03022010_transformation
#define cd03022010_transformation

#include "gamera.hpp"
#include "gameramodule.hpp"
#include "gamera_limits.hpp"
#include "vigra/resizeimage.hxx"
#include "vigra/basicgeometry.hxx"
#include "vigra/affinegeometry.hxx"
#include "plugins/logical.hpp"
#include "image_utilities.hpp"
#include <exception>
#include <math.h>
#include <algorithm>


namespace Gamera {
  

  /*
   * Rotate at an arbitrary angle.
   *
   * This algorithm works by first rotating for 90 degrees, depending whether
   * height and width are exchanged by rotation or not.
   * Afterwards VIGRA's rotation algorithm is called, which allows
   * for different types of interpolation.
   *
   * src - A view of of the source image
   * angle - Degree of rotation
   * bgcolor - Background color
   *
   */
  template<class T>
  typename ImageFactory<T>::view_type* rotate(const T &src, double angle, typename T::value_type bgcolor, int order)
  {
    if (order < 1 || order > 3) {
      throw std::range_error("Order must be between 1 and 3");
    }
  
    // Adjust angle to a positive double between 0-360
    while(angle<0.0) angle+=360;
    while(angle>=360.0) angle-=360;

    // some angle ranges flip width and height
    // as VIGRA requires source and destination to be of the same
    // size, it cannot handle a reduce in one image dimension.
    // Hence we must rotate by 90 degrees, if necessary
    bool rot90done = false;
    typename ImageFactory<T>::view_type* prep4vigra = (typename ImageFactory<T>::view_type*) &src;
    if ((45 < angle && angle < 135) ||
        (225 < angle && angle < 315)) {
      typename ImageFactory<T>::data_type* prep4vigra_data =
        new typename ImageFactory<T>::data_type(Size(src.height(),src.width()));
      prep4vigra = new typename ImageFactory<T>::view_type(*prep4vigra_data);
      size_t ymax = src.nrows() - 1;
      for (size_t y = 0; y < src.nrows(); ++y) {
        for (size_t x = 0; x < src.ncols(); ++x) {
          prep4vigra->set(Point(ymax-y,x), src.get(Point(x,y)));
        }
      }
      rot90done = true;
      // recompute rotation angle, because partial rotation already done
      angle -= 90.0;
      if (angle < 0.0) angle +=360;
    }

    double rad = (angle / 180.0) * M_PI;

    // new width/height depending on angle
    size_t new_width, new_height;
    if ((0 <= angle && angle <= 90) ||
        (180 <= angle && angle <= 270)) {
      new_width = size_t(0.5+abs(cos(rad) * (double)prep4vigra->width() + 
                                 sin(rad) * (double)prep4vigra->height()));
      new_height = size_t(0.5+abs(sin(rad) * (double)prep4vigra->width() + 
                                  cos(rad) * (double)prep4vigra->height()));
    } else {
      new_width = size_t(0.5+abs(cos(rad) * (double)prep4vigra->width() - 
                                 sin(rad) * (double)prep4vigra->height()));
      new_height = size_t(0.5+abs(sin(rad) * (double)prep4vigra->width() - 
                                  cos(rad) * (double)prep4vigra->height()));
    }
    size_t pad_width = 0;
    if (new_width > prep4vigra->width())
      pad_width = (new_width - prep4vigra->width()) / 2 + 2;
    size_t pad_height = 0;
    if (new_height > prep4vigra->height())
      pad_height = (new_height - prep4vigra->height()) / 2 + 2;

    typename ImageFactory<T>::view_type* tmp =
      pad_image(*prep4vigra, pad_height, pad_width, pad_height, pad_width, bgcolor);

    typename ImageFactory<T>::data_type* dest_data =
      new typename ImageFactory<T>::data_type(tmp->size());
    typename ImageFactory<T>::view_type* dest =
      new typename ImageFactory<T>::view_type(*dest_data);

    try {
      fill(*dest, bgcolor);

      if (order == 1) {
        vigra::SplineImageView<1, typename T::value_type> 
          spline(src_image_range(*tmp));
        vigra::rotateImage(spline, dest_image(*dest), -angle);
      } else if (order == 2) {
        vigra::SplineImageView<2, typename T::value_type> 
          spline(src_image_range(*tmp));
        vigra::rotateImage(spline, dest_image(*dest), -angle);
      } else if (order == 3) {
        vigra::SplineImageView<3, typename T::value_type> 
          spline(src_image_range(*tmp));
        vigra::rotateImage(spline, dest_image(*dest), -angle);
      }
    } catch (std::exception e) {
      delete tmp->data();
      delete tmp;
      delete dest;
      delete dest_data;
      if (rot90done) {
        delete prep4vigra->data();
        delete prep4vigra;
      }
      throw;
    }

    if (rot90done) {
      delete prep4vigra->data();
      delete prep4vigra;
    }
    delete tmp->data();
    delete tmp;

    return dest;
  }

  template<class T>
  Image* resize(T& image, const Dim& dim, int resize_quality) {
    typename T::data_type* data = new typename T::data_type
      (dim, image.origin());
    ImageView<typename T::data_type>* view = 
      new ImageView<typename T::data_type>(*data);
    /*
      Images with nrows or ncols == 1 cannot be scaled by VIGRA.
      This is a hack that just returns an image with the same 
      color as the upper-left pixel
    */
    if (image.nrows() <= 1 || image.ncols() <= 1 || 
	view->nrows() <= 1 || view->ncols() <= 1) {
      std::fill(view->vec_begin(), view->vec_end(), image.get(Point(0, 0)));
      return view;
    }
    if (resize_quality == 0) {
      // for straight scaling, resampleImage must be used in VIGRA
      double xfactor = (double)view->ncols()/image.ncols();
      double yfactor = (double)view->nrows()/image.nrows();
      // this is implemented incorrectly in VIGRA:
      //resizeImageNoInterpolation(src_image_range(image), dest_image_range(*view));
      // the following works however:
      // requires extension of VIGRA (see basicgeometry.hxx)
      // that are not yet merged into VIGRA 1.6.0
      resampleImage(src_image_range(image), dest_image(*view), xfactor, yfactor);
    } else if (resize_quality == 1) {
      resizeImageLinearInterpolation(src_image_range(image), dest_image_range(*view));
    } else {
      resizeImageSplineInterpolation(src_image_range(image), dest_image_range(*view));
    }
    image_copy_attributes(image, *view);
    return view;
  }

  template<class T>
  Image* scale(T& image, double scaling, int resize_quality) {
    // nrows, ncols are cast to a double so that the multiplication happens
    // exactly as it does in Python
    return resize(image, 
		  Dim(size_t(double(image.ncols()) * scaling),
		      size_t(double(image.nrows()) * scaling)),
		  resize_quality);
  }



  /*
    Shearing
  */

  template<class T>
  inline void simple_shear(T begin, const T end, int distance) {
    // short-circuit
    if (distance == 0)
      return;
    typename T::value_type filler;
    // move down or right
    if (distance > 0) {
      filler = *begin;
      std::copy_backward(begin, end - distance, end);
      std::fill(begin, begin + distance, filler);
      // move up or left
    } else if (distance < 0) {
      filler = *(end - 1);
      std::copy(begin - distance, end, begin);
      std::fill(end + distance, end, filler);
    } // if distance == 0, do nothing
  }

  template<class T>
  void shear_column(T& mat, size_t column, int distance) {
    if (size_t(std::abs(distance)) >= mat.nrows())
      throw std::range_error("Tried to shear column too far");
    if (column >= mat.ncols())
      throw std::range_error("Column argument to shear_column out of range");
    simple_shear((mat.col_begin() + column).begin(),
		 (mat.col_begin() + column).end(), distance);
  }

  template<class T>
  void shear_row(T& mat, size_t row, int distance) {
    if (size_t(std::abs(distance)) >= mat.ncols())
      throw std::range_error("Tried to shear column too far");
    if (row >= mat.nrows())
      throw std::range_error("Column argument to shear_column out of range");
    simple_shear((mat.row_begin() + row).begin(),
		 (mat.row_begin() + row).end(), distance);
  }


  // mirror operations

  template<class T>
  void mirror_horizontal(T& m) {
    for (size_t r = 0; r < size_t(m.nrows()) / 2; ++r) {
      for (size_t c = 0; c < m.ncols(); ++c) {
	typename T::value_type tmp = m.get(Point(c, r));
	m.set(Point(c, r), m.get(Point(c, m.nrows() - r - 1)));
	m.set(Point(c, m.nrows() - r - 1), tmp);
      }
    }
  }

  template<class T>
  void mirror_vertical(T& m) {
    for (size_t r = 0; r < m.nrows(); ++r) {
      for (size_t c = 0; c < size_t(m.ncols() / 2); ++c) {
	typename T::value_type tmp = m.get(Point(c, r));
	m.set(Point(c, r), m.get(Point(m.ncols() - c - 1, r)));
	m.set(Point(m.ncols() - c - 1, r), tmp);
      }
    }
  }


}
#endif