/usr/lib/python3/dist-packages/csb/test/data/d1b24a2.hhm is in python3-csb 1.2.2+dfsg-2ubuntu1.
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NAME d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
FAM d.95.2.1
LENG 80 match states, 80 columns in multiple alignment
NEFF 1.5
PCT False
SEQ
>ss_dssp
GCCHHHHHHHHHHHHHHHSCTTCSSCEEEESCHHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGGHHHHHHHHC-
>ss_pred
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHCCCC
>ss_conf
97867889998765421365112478876313689999999999708601487426645279994586536655320579
>Consensus
gfxpxErxAFIxGLYdAEGDKtgrRaRiWNKNxrLLelVxxWLxexGiestihLDDkRHGVYVLevpxxxRxkfxxxixx
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
LFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILS
>gi|47155410|dbj|BAD18906.1|(4-179:234) rRNA intron-encoded endonuclease [Thermoproteus sp. IC-062] gi|47155408|dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermoproteus sp. IC-061] E=4e-47 s/c=0.40 id=58% cov=98%
GFQPSERAAFIEGLYDAEGDKSGRRARIWNKNLRLLELVKNWLSEFGIESTIHLDDKRHGVYVLEVpsPYRDRfFKLIHP---
>gi|126460471|ref|YP_001056749.1|(5-180:235) hypothetical protein Pcal_1867 [Pyrobaculum calidifontis JCM 11548] gi|126250192|gb|ABO09283.1| hypothetical protein Pcal_1867 [Pyrobaculum calidifontis JCM 11548] E=4e-77 s/c=0.70 id=48% cov=101%
GLAPDERIAFIRGLYDAEGDKTGRRARLWNKNRRLLDLVGSWLRELGIESRVYLDDKRHGVYVLEVPSPYRRRFFELLYP
>gi|47155410|dbj|BAD18906.1|(4-179:234) rRNA intron-encoded endonuclease [Thermoproteus sp. IC-062] gi|47155408|dbj|BAD18905.1| rRNA intron-encoded endonuclease [Thermoproteus sp. IC-061] E=1e-76 s/c=0.68 id=53% cov=101%
GFQPSERAAFIEGLYDAEGDKSGRRARIWNKNLRLLELVKNWLSEFGIESTIHLDDKRHGVYVLEVPSPYRDRFFKLIHP
#
NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
HMM A C D E F G H I K L M N P Q R S T V W Y
M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
0 * * * * * * * * *
L 1 * * * * * 530 * * * 1702 * * * * * * * * * * 1
0 * * * * * * 1508 0 0
F 2 * * * * 425 * * * * 1969 * * * * * * * * * * 2
0 * * * * * * 1508 0 0
N 3 1969 * * * * * * * * * * 1702 * 1194 * * * * * * 3
0 * * * * * * 1508 0 0
M 4 * * * * * * * * * * 1702 * 530 * * * * * * * 4
0 * * * * * * 1508 0 0
R 5 * * 1969 * * * * * * * * * * * 1702 1194 * * * * 5
0 * * * * * * 1508 0 0
E 6 * * * 0 * * * * * * * * * * * * * * * * 6
0 * * * * * * 1508 0 0
Q 7 * * * * * * * * * * * * * 1702 530 * * * * * 7
0 * * * * * * 1508 0 0
I 8 1194 * * * * * * 829 * * * * * * * * * * * * 8
0 * * * * * * 1508 0 0
A 9 0 * * * * * * * * * * * * * * * * * * * 9
0 * * * * * * 1508 0 0
F 10 * * * * 0 * * * * * * * * * * * * * * * 10
0 * * * * * * 1508 0 0
I 11 * * * * * * * 0 * * * * * * * * * * * * 11
0 * * * * * * 1508 0 0
K 12 * * * 1194 * * * * 1702 * * * * * 1969 * * * * * 12
0 * * * * * * 1508 0 0
G 13 * * * * * 0 * * * * * * * * * * * * * * 13
0 * * * * * * 1508 0 0
L 14 * * * * * * * * * 0 * * * * * * * * * * 14
0 * * * * * * 1508 0 0
Y 15 * * * * * * * * * * * * * * * * * * * 0 15
0 * * * * * * 1508 0 0
V 16 * * 530 * * * * * * * * * * * * * * 1702 * * 16
0 * * * * * * 1508 0 0
A 17 0 * * * * * * * * * * * * * * * * * * * 17
0 * * * * * * 1508 0 0
E 18 * * * 0 * * * * * * * * * * * * * * * * 18
0 * * * * * * 1508 0 0
G 19 * * * * * 0 * * * * * * * * * * * * * * 19
0 * * * * * * 1508 0 0
D 20 * * 0 * * * * * * * * * * * * * * * * * 20
0 * * * * * * 1508 0 0
K 21 * * * * * * * * 0 * * * * * * * * * * * 21
0 * * * * * * 1508 0 0
T 22 * * * * * * * * * * * * * * * 1194 829 * * * 22
0 * * * * * * 1508 0 0
L 23 * * * * * 530 * * * 1702 * * * * * * * * * * 23
0 * * * * * * 1508 0 0
K 24 * * * * * * * * 1702 * * * * * 530 * * * * * 24
0 * * * * * * 1508 0 0
R 25 * * * * * * * * * * * * * * 0 * * * * * 25
0 * * * * * * 1508 0 0
L 26 530 * * * * * * * * 1702 * * * * * * * * * * 26
0 * * * * * * 1508 0 0
R 27 * * * * * * * * * * * * * * 0 * * * * * 27
0 * * * * * * 1508 0 0
I 28 * * * * * * * 425 * 1969 * * * * * * * * * * 28
0 * * * * * * 1508 0 0
W 29 * * * * * * * * * * * * * * * * * * 0 * 29
0 * * * * * * 1508 0 0
N 30 * * * * * * * * * * * 0 * * * * * * * * 30
0 * * * * * * 1508 0 0
K 31 * * * * * * * * 0 * * * * * * * * * * * 31
0 * * * * * * 1508 0 0
N 32 * * * * * * * * * * * 0 * * * * * * * * 32
0 * * * * * * 1508 0 0
K 33 * * * * * * * * 1702 1194 * * * * 1969 * * * * * 33
0 * * * * * * 1508 0 0
A 34 1702 * * * * * * * * * * * * * 530 * * * * * 34
0 * * * * * * 1508 0 0
L 35 * * * * * * * * * 0 * * * * * * * * * * 35
0 * * * * * * 1508 0 0
L 36 * * * * * * * * * 0 * * * * * * * * * * 36
0 * * * * * * 1508 0 0
E 37 * * 1969 425 * * * * * * * * * * * * * * * * 37
0 * * * * * * 1508 0 0
I 38 * * * * * * * 1702 * 530 * * * * * * * * * * 38
0 * * * * * * 1508 0 0
V 39 * * * * * * * * * * * * * * * * * 0 * * 39
0 * * * * * * 1508 0 0
S 40 * * * * * 1969 * * 1194 * * * * * * 1702 * * * * 40
0 * * * * * * 1508 0 0
R 41 * * * * * * * * * * * 1194 * * 1702 1969 * * * * 41
0 * * * * * * 1508 0 0
W 42 * * * * * * * * * * * * * * * * * * 0 * 42
0 * * * * * * 1508 0 0
L 43 * * * * * * * * * 0 * * * * * * * * * * 43
0 * * * * * * 1508 0 0
N 44 * * * * * * * * * * * 1702 * * 1969 1194 * * * * 44
0 * * * * * * 1508 0 0
N 45 * * * 530 * * * * * * * 1702 * * * * * * * * 45
0 * * * * * * 1508 0 0
L 46 * * * * 1194 * * * * 829 * * * * * * * * * * 46
0 * * * * * * 1508 0 0
G 47 * * * * * 0 * * * * * * * * * * * * * * 47
0 * * * * * * 1508 0 0
V 48 * * * * * * * 530 * * * * * * * * * 1702 * * 48
0 * * * * * * 1508 0 0
R 49 * * * 530 * * * * * * * * * * 1702 * * * * * 49
0 * * * * * * 1508 0 0
N 50 * * * * * * * * * * * 1702 * * * 530 * * * * 50
0 * * * * * * 1508 0 0
T 51 * * * * * * * * * * * * * * 1969 * 425 * * * 51
0 * * * * * * 1508 0 0
I 52 * * * * * * * 425 * * * * * * * * * 1969 * * 52
0 * * * * * * 1508 0 0
H 53 * * * * * * 425 * * * * * * * * * * * * 1969 53
0 * * * * * * 1508 0 0
L 54 * * * * * * * * * 0 * * * * * * * * * * 54
0 * * * * * * 1508 0 0
D 55 * * 0 * * * * * * * * * * * * * * * * * 55
0 * * * * * * 1508 0 0
D 56 * * 0 * * * * * * * * * * * * * * * * * 56
0 * * * * * * 1508 0 0
H 57 * * * * * * 1702 * 530 * * * * * * * * * * * 57
0 * * * * * * 1508 0 0
R 58 * * * * * * * * * * * * * * 0 * * * * * 58
0 * * * * * * 1508 0 0
H 59 * * * * * * 0 * * * * * * * * * * * * * 59
0 * * * * * * 1508 0 0
G 60 * * * * * 0 * * * * * * * * * * * * * * 60
0 * * * * * * 1508 0 0
V 61 * * * * * * * * * * * * * * * * * 0 * * 61
0 * * * * * * 1508 0 0
Y 62 * * * * * * * * * * * * * * * * * * * 0 62
0 * * * * * * 1508 0 0
V 63 * * * * * * * * * * * * * * * * * 0 * * 63
0 * * * * * * 1508 0 0
L 64 * * * * * * * * * 0 * * * * * * * * * * 64
0 * * * * * * 1508 0 0
N 65 * * * 530 * * * * * * * 1702 * * * * * * * * 65
0 * * * * * * 1508 0 0
I 66 * * * * * * * 1702 * * * * * * * * * 530 * * 66
364 2165 * 1000 1000 * * 1508 1000 0
S 67 * * * * * * * * * * * * 530 * * 1702 * * * * 67
0 * * * * * * 1508 0 0
L 68 * * * * * * * * * 1702 * * * * * 1090 * * * 2165 68
0 * * * * * * 1508 0 0
R 69 * * * * * * * * * * * * 1090 * 915 * * * * * 69
0 * * * * * * 1508 0 0
D 70 * * 915 * * * * * * * * * * * * * * * * 1090 70
0 * * * * * * 1508 0 0
R 71 * * * * * * * * * * * * * * 0 * * * * * 71
364 2165 * 0 * * * 1508 1000 0
I 72 * * 2222 * 2165 * * 1702 * * * * * * 1969 * * * * * 72
0 * * * * * * 1508 0 0
K 73 * * * * * * * * 915 * * * * * 1090 * * * * * 73
0 * * * * * * 1508 0 0
F 74 * * * * 364 * * * * 2165 * * * * * * * * * * 74
0 * * * * * * 1508 0 0
V 75 * * * * 1090 * * 2165 * * * * * * * * * 1702 * * 75
0 * * * * * * 1508 0 0
H 76 * * * 1969 * * 915 * 2222 * * * * * * * * * * * 76
0 * * * * * * 1508 0 0
T 77 * * * * * * * * * 1090 * * 2165 * * * 1702 * * * 77
0 * * * * * * 1508 0 0
I 78 * * * * * * * 556 * 1645 * * * * * * * * * * 78
0 * * * * * * 1511 0 0
L 79 * * * * * * 1702 * * 1423 * * * * * * * * * 1645 79
0 * * * * * * 1511 0 0
S 80 * * * * * * * * * * * * 673 * * 1423 * * * * 80
0 * * 0 * * * 1511 0 0
//
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