This file is indexed.

/usr/lib/R/site-library/bio3d/NAMESPACE is in r-other-bio3d 1.1-5-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

1
export(aa123, aa2index, aa321, aln2html, angle.xyz, atom2xyz, atom.select, blast.pdb, bounds, bwr.colors, chain.pdb, cmap, consensus, conserv, convert.pdb, core.find, dccm, diag.ind, dist.xyz, dm, dm.xyz, dssp, entropy, fit.xyz, gap.inspect, get.pdb, get.seq, ide.filter, identity, is.gap, lbio3d, mktrj.pca, mono.colors, orient.pdb, pairwise, pca.project, pca.tor, pca.xyz, pca.xyz2z, pca.z2xyz, pdb.summary, plot.bio3d, plot.blast, plot.core, plot.dccm, plot.dmat, plot.pca, plot.pca.loadings, plot.pca.score, plot.pca.scree, print.core, read.all, read.crd, read.dcd, read.fasta, read.fasta.pdb, read.ncdf, read.pdb, read.pqr, rmsd, rmsd.filter, rmsf, rot.lsq, seqaln, seqaln.pair, seqbind, seq.pdb, seq2aln, split.pdb, store.atom, stride, torsion.pdb, torsion.xyz, trim.pdb, unbound, vec2resno, wiki.tbl, wrap.tor, write.crd, write.fasta, write.ncdf, write.pdb, write.pqr, read.pdcBD, motif.find, pdbaln, rle2, print.rle2, print.pdb, difference.vector, overlap, rmsip)