This file is indexed.

/usr/lib/R/site-library/bio3d/examples/hivp.pdb is in r-other-bio3d 1.1-5-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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ATOM      1  CA  PRO A   1      51.842  59.784  -6.815  1.00  0.00          
ATOM      2  CA  GLN A   2      51.577  59.564  -2.997  1.00  0.00          
ATOM      3  CA  ILE A   3      48.107  57.932  -2.171  1.00  0.00          
ATOM      4  CA  THR A   4      46.701  58.033   1.344  1.00  0.00          
ATOM      5  CA  LEU A   5      44.183  55.442   2.514  1.00  0.00          
ATOM      6  CA  TRP A   6      41.544  57.701   4.088  1.00  0.00          
ATOM      7  CA  GLN A   7      39.388  56.510   1.115  1.00  0.00          
ATOM      8  CA  ARG A   8      39.662  53.213  -0.904  1.00  0.00          
ATOM      9  CA  PRO A   9      42.708  53.768  -3.078  1.00  0.00          
ATOM     10  CA  LEU A  10      40.903  53.618  -6.532  1.00  0.00          
ATOM     11  CA  VAL A  11      42.884  54.589  -9.625  1.00  0.00          
ATOM     12  CA  THR A  12      42.251  54.709 -13.425  1.00  0.00          
ATOM     13  CA  ILE A  13      43.809  51.981 -15.445  1.00  0.00          
ATOM     14  CA  LYS A  14      43.975  51.774 -19.198  1.00  0.00          
ATOM     15  CA  ILE A  15      43.797  48.245 -20.632  1.00  0.00          
ATOM     16  CA  GLY A  16      42.521  47.316 -24.076  1.00  0.00          
ATOM     17  CA  GLY A  17      41.869  50.971 -25.072  1.00  0.00          
ATOM     18  CA  GLN A  18      39.188  50.443 -22.473  1.00  0.00          
ATOM     19  CA  LEU A  19      39.687  52.728 -19.521  1.00  0.00          
ATOM     20  CA  LYS A  20      38.532  51.307 -16.096  1.00  0.00          
ATOM     21  CA  GLU A  21      39.141  52.167 -12.417  1.00  0.00          
ATOM     22  CA  ALA A  22      40.640  49.603 -10.016  1.00  0.00          
ATOM     23  CA  LEU A  23      41.703  49.173  -6.386  1.00  0.00          
ATOM     24  CA  LEU A  24      45.477  49.089  -5.522  1.00  0.00          
ATOM     25  CA  ASP A  25      45.318  46.159  -3.128  1.00  0.00          
ATOM     26  CA  THR A  26      48.582  45.179  -1.430  1.00  0.00          
ATOM     27  CA  GLY A  27      46.733  42.224  -0.031  1.00  0.00          
ATOM     28  CA  ALA A  28      45.775  40.761  -3.455  1.00  0.00          
ATOM     29  CA  ASP A  29      48.501  38.562  -4.998  1.00  0.00          
ATOM     30  CA  ASP A  30      46.716  38.676  -8.410  1.00  0.00          
ATOM     31  CA  THR A  31      44.915  41.225 -10.624  1.00  0.00          
ATOM     32  CA  VAL A  32      41.270  40.373 -11.334  1.00  0.00          
ATOM     33  CA  LEU A  33      39.440  42.554 -13.719  1.00  0.00          
ATOM     34  CA  GLU A  34      35.920  42.747 -14.872  1.00  0.00          
ATOM     35  CA  GLU A  35      34.897  40.976 -18.035  1.00  0.00          
ATOM     36  CA  MET A  36      36.229  42.597 -21.125  1.00  0.00          
ATOM     37  CA  SER A  37      37.638  41.297 -24.332  1.00  0.00          
ATOM     38  CA  LEU A  38      41.219  41.024 -24.431  1.00  0.00          
ATOM     39  CA  PRO A  39      42.734  39.737 -27.687  1.00  0.00          
ATOM     40  CA  GLY A  40      44.704  36.743 -26.500  1.00  0.00          
ATOM     41  CA  ARG A  41      45.060  33.095 -25.730  1.00  0.00          
ATOM     42  CA  TRP A  42      43.813  32.352 -22.311  1.00  0.00          
ATOM     43  CA  LYS A  43      44.000  29.437 -19.900  1.00  0.00          
ATOM     44  CA  PRO A  44      41.164  28.670 -17.317  1.00  0.00          
ATOM     45  CA  LYS A  45      41.624  29.507 -13.608  1.00  0.00          
ATOM     46  CA  MET A  46      39.283  29.172 -10.580  1.00  0.00          
ATOM     47  CA  ILE A  47      39.491  31.925  -7.918  1.00  0.00          
ATOM     48  CA  GLY A  48      37.788  32.073  -4.568  1.00  0.00          
ATOM     49  CA  GLY A  49      35.043  34.442  -3.513  1.00  0.00          
ATOM     50  CA  ILE A  50      32.347  35.074  -0.949  1.00  0.00          
ATOM     51  CA  GLY A  51      29.854  32.271  -1.556  1.00  0.00          
ATOM     52  CA  GLY A  52      32.385  30.105  -3.553  1.00  0.00          
ATOM     53  CA  PHE A  53      34.898  29.701  -6.356  1.00  0.00          
ATOM     54  CA  ILE A  54      34.222  31.428  -9.650  1.00  0.00          
ATOM     55  CA  LYS A  55      36.012  30.468 -12.945  1.00  0.00          
ATOM     56  CA  VAL A  56      37.951  33.331 -14.627  1.00  0.00          
ATOM     57  CA  ARG A  57      40.195  33.474 -17.711  1.00  0.00          
ATOM     58  CA  GLN A  58      43.958  34.040 -17.315  1.00  0.00          
ATOM     59  CA  TYR A  59      45.679  36.355 -19.847  1.00  0.00          
ATOM     60  CA  ASP A  60      49.549  36.399 -19.405  1.00  0.00          
ATOM     61  CA  GLN A  61      51.715  39.205 -20.715  1.00  0.00          
ATOM     62  CA  ILE A  62      48.974  41.895 -20.905  1.00  0.00          
ATOM     63  CA  LEU A  63      50.169  45.531 -20.985  1.00  0.00          
ATOM     64  CA  ILE A  64      48.156  47.683 -18.627  1.00  0.00          
ATOM     65  CA  GLU A  65      48.817  51.312 -17.679  1.00  0.00          
ATOM     66  CA  ILE A  66      48.259  52.150 -13.988  1.00  0.00          
ATOM     67  CA  CYS A  67      48.343  55.819 -13.081  1.00  0.00          
ATOM     68  CA  GLY A  68      50.240  56.475 -16.154  1.00  0.00          
ATOM     69  CA  HIS A  69      52.828  53.643 -15.720  1.00  0.00          
ATOM     70  CA  LYS A  70      53.041  50.890 -18.295  1.00  0.00          
ATOM     71  CA  ALA A  71      53.222  47.514 -16.704  1.00  0.00          
ATOM     72  CA  ILE A  72      53.255  44.000 -18.230  1.00  0.00          
ATOM     73  CA  GLY A  73      51.697  41.280 -16.224  1.00  0.00          
ATOM     74  CA  THR A  74      49.054  38.652 -16.082  1.00  0.00          
ATOM     75  CA  VAL A  75      45.485  39.767 -15.462  1.00  0.00          
ATOM     76  CA  LEU A  76      42.659  37.379 -14.574  1.00  0.00          
ATOM     77  CA  VAL A  77      39.347  38.530 -16.381  1.00  0.00          
ATOM     78  CA  GLY A  78      36.102  37.372 -14.768  1.00  0.00          
ATOM     79  CA  PRO A  79      32.810  38.262 -12.975  1.00  0.00          
ATOM     80  CA  THR A  80      34.467  40.006 -10.125  1.00  0.00          
ATOM     81  CA  PRO A  81      32.448  42.646  -8.163  1.00  0.00          
ATOM     82  CA  VAL A  82      35.612  44.765  -8.065  1.00  0.00          
ATOM     83  CA  ASN A  83      38.639  45.443 -10.272  1.00  0.00          
ATOM     84  CA  ILE A  84      41.739  44.698  -8.177  1.00  0.00          
ATOM     85  CA  ILE A  85      45.407  45.630  -9.031  1.00  0.00          
ATOM     86  CA  GLY A  86      47.282  43.168  -6.872  1.00  0.00          
ATOM     87  CA  ARG A  87      50.954  42.682  -6.044  1.00  0.00          
ATOM     88  CA  ASN A  88      51.888  40.981  -9.300  1.00  0.00          
ATOM     89  CA  LEU A  89      51.485  44.433 -11.016  1.00  0.00          
ATOM     90  CA  LEU A  90      52.110  46.793  -8.029  1.00  0.00          
ATOM     91  CA  THR A  91      55.719  45.544  -8.243  1.00  0.00          
ATOM     92  CA  GLN A  92      56.232  46.651 -11.858  1.00  0.00          
ATOM     93  CA  ILE A  93      55.001  50.180 -11.313  1.00  0.00          
ATOM     94  CA  GLY A  94      57.347  50.391  -8.267  1.00  0.00          
ATOM     95  CA  CYS A  95      54.716  50.613  -5.473  1.00  0.00          
ATOM     96  CA  THR A  96      55.903  50.713  -1.945  1.00  0.00          
ATOM     97  CA  LEU A  97      54.052  51.039   1.392  1.00  0.00          
ATOM     98  CA  ASN A  98      55.612  53.860   3.315  1.00  0.00          
ATOM     99  CA  PHE A  99      55.232  55.089   6.899  1.00  0.00          
ATOM    100  CA  PRO B   1      59.784  51.842   6.815  1.00  0.00          
ATOM    101  CA  GLN B   2      59.564  51.577   2.997  1.00  0.00          
ATOM    102  CA  ILE B   3      57.932  48.107   2.171  1.00  0.00          
ATOM    103  CA  THR B   4      58.033  46.701  -1.344  1.00  0.00          
ATOM    104  CA  LEU B   5      55.442  44.183  -2.514  1.00  0.00          
ATOM    105  CA  TRP B   6      57.701  41.544  -4.088  1.00  0.00          
ATOM    106  CA  GLN B   7      56.510  39.388  -1.115  1.00  0.00          
ATOM    107  CA  ARG B   8      53.213  39.662   0.904  1.00  0.00          
ATOM    108  CA  PRO B   9      53.768  42.708   3.078  1.00  0.00          
ATOM    109  CA  LEU B  10      53.618  40.903   6.532  1.00  0.00          
ATOM    110  CA  VAL B  11      54.589  42.884   9.625  1.00  0.00          
ATOM    111  CA  THR B  12      54.709  42.251  13.425  1.00  0.00          
ATOM    112  CA  ILE B  13      51.981  43.809  15.445  1.00  0.00          
ATOM    113  CA  LYS B  14      51.774  43.975  19.198  1.00  0.00          
ATOM    114  CA  ILE B  15      48.245  43.797  20.632  1.00  0.00          
ATOM    115  CA  GLY B  16      47.316  42.521  24.076  1.00  0.00          
ATOM    116  CA  GLY B  17      50.971  41.869  25.072  1.00  0.00          
ATOM    117  CA  GLN B  18      50.443  39.188  22.473  1.00  0.00          
ATOM    118  CA  LEU B  19      52.728  39.687  19.521  1.00  0.00          
ATOM    119  CA  LYS B  20      51.307  38.532  16.096  1.00  0.00          
ATOM    120  CA  GLU B  21      52.167  39.141  12.417  1.00  0.00          
ATOM    121  CA  ALA B  22      49.603  40.640  10.016  1.00  0.00          
ATOM    122  CA  LEU B  23      49.173  41.703   6.386  1.00  0.00          
ATOM    123  CA  LEU B  24      49.089  45.477   5.522  1.00  0.00          
ATOM    124  CA  ASP B  25      46.159  45.318   3.128  1.00  0.00          
ATOM    125  CA  THR B  26      45.179  48.582   1.430  1.00  0.00          
ATOM    126  CA  GLY B  27      42.224  46.733   0.031  1.00  0.00          
ATOM    127  CA  ALA B  28      40.761  45.775   3.455  1.00  0.00          
ATOM    128  CA  ASP B  29      38.562  48.501   4.998  1.00  0.00          
ATOM    129  CA  ASP B  30      38.676  46.716   8.410  1.00  0.00          
ATOM    130  CA  THR B  31      41.225  44.915  10.624  1.00  0.00          
ATOM    131  CA  VAL B  32      40.373  41.270  11.334  1.00  0.00          
ATOM    132  CA  LEU B  33      42.554  39.440  13.719  1.00  0.00          
ATOM    133  CA  GLU B  34      42.747  35.920  14.872  1.00  0.00          
ATOM    134  CA  GLU B  35      40.976  34.897  18.035  1.00  0.00          
ATOM    135  CA  MET B  36      42.597  36.229  21.125  1.00  0.00          
ATOM    136  CA  SER B  37      41.297  37.638  24.332  1.00  0.00          
ATOM    137  CA  LEU B  38      41.024  41.219  24.431  1.00  0.00          
ATOM    138  CA  PRO B  39      39.737  42.734  27.687  1.00  0.00          
ATOM    139  CA  GLY B  40      36.743  44.704  26.500  1.00  0.00          
ATOM    140  CA  ARG B  41      33.095  45.060  25.730  1.00  0.00          
ATOM    141  CA  TRP B  42      32.352  43.813  22.311  1.00  0.00          
ATOM    142  CA  LYS B  43      29.437  44.000  19.900  1.00  0.00          
ATOM    143  CA  PRO B  44      28.670  41.164  17.317  1.00  0.00          
ATOM    144  CA  LYS B  45      29.507  41.624  13.608  1.00  0.00          
ATOM    145  CA  MET B  46      29.172  39.283  10.580  1.00  0.00          
ATOM    146  CA  ILE B  47      31.925  39.491   7.918  1.00  0.00          
ATOM    147  CA  GLY B  48      32.073  37.788   4.568  1.00  0.00          
ATOM    148  CA  GLY B  49      34.442  35.043   3.513  1.00  0.00          
ATOM    149  CA  ILE B  50      35.074  32.347   0.949  1.00  0.00          
ATOM    150  CA  GLY B  51      32.271  29.854   1.556  1.00  0.00          
ATOM    151  CA  GLY B  52      30.105  32.385   3.553  1.00  0.00          
ATOM    152  CA  PHE B  53      29.701  34.898   6.356  1.00  0.00          
ATOM    153  CA  ILE B  54      31.428  34.222   9.650  1.00  0.00          
ATOM    154  CA  LYS B  55      30.468  36.012  12.945  1.00  0.00          
ATOM    155  CA  VAL B  56      33.331  37.951  14.627  1.00  0.00          
ATOM    156  CA  ARG B  57      33.474  40.195  17.711  1.00  0.00          
ATOM    157  CA  GLN B  58      34.040  43.958  17.315  1.00  0.00          
ATOM    158  CA  TYR B  59      36.355  45.679  19.847  1.00  0.00          
ATOM    159  CA  ASP B  60      36.399  49.549  19.405  1.00  0.00          
ATOM    160  CA  GLN B  61      39.205  51.715  20.715  1.00  0.00          
ATOM    161  CA  ILE B  62      41.895  48.974  20.905  1.00  0.00          
ATOM    162  CA  LEU B  63      45.531  50.169  20.985  1.00  0.00          
ATOM    163  CA  ILE B  64      47.683  48.156  18.627  1.00  0.00          
ATOM    164  CA  GLU B  65      51.312  48.817  17.679  1.00  0.00          
ATOM    165  CA  ILE B  66      52.150  48.259  13.988  1.00  0.00          
ATOM    166  CA  CYS B  67      55.819  48.343  13.081  1.00  0.00          
ATOM    167  CA  GLY B  68      56.475  50.240  16.154  1.00  0.00          
ATOM    168  CA  HIS B  69      53.643  52.828  15.720  1.00  0.00          
ATOM    169  CA  LYS B  70      50.890  53.041  18.295  1.00  0.00          
ATOM    170  CA  ALA B  71      47.514  53.222  16.704  1.00  0.00          
ATOM    171  CA  ILE B  72      44.000  53.255  18.230  1.00  0.00          
ATOM    172  CA  GLY B  73      41.280  51.697  16.224  1.00  0.00          
ATOM    173  CA  THR B  74      38.652  49.054  16.082  1.00  0.00          
ATOM    174  CA  VAL B  75      39.767  45.485  15.462  1.00  0.00          
ATOM    175  CA  LEU B  76      37.379  42.659  14.574  1.00  0.00          
ATOM    176  CA  VAL B  77      38.530  39.347  16.381  1.00  0.00          
ATOM    177  CA  GLY B  78      37.372  36.102  14.768  1.00  0.00          
ATOM    178  CA  PRO B  79      38.262  32.810  12.975  1.00  0.00          
ATOM    179  CA  THR B  80      40.006  34.467  10.125  1.00  0.00          
ATOM    180  CA  PRO B  81      42.646  32.448   8.163  1.00  0.00          
ATOM    181  CA  VAL B  82      44.765  35.612   8.065  1.00  0.00          
ATOM    182  CA  ASN B  83      45.443  38.639  10.272  1.00  0.00          
ATOM    183  CA  ILE B  84      44.698  41.739   8.177  1.00  0.00          
ATOM    184  CA  ILE B  85      45.630  45.407   9.031  1.00  0.00          
ATOM    185  CA  GLY B  86      43.168  47.282   6.872  1.00  0.00          
ATOM    186  CA  ARG B  87      42.682  50.954   6.044  1.00  0.00          
ATOM    187  CA  ASN B  88      40.981  51.888   9.300  1.00  0.00          
ATOM    188  CA  LEU B  89      44.433  51.485  11.016  1.00  0.00          
ATOM    189  CA  LEU B  90      46.793  52.110   8.029  1.00  0.00          
ATOM    190  CA  THR B  91      45.544  55.719   8.243  1.00  0.00          
ATOM    191  CA  GLN B  92      46.651  56.232  11.858  1.00  0.00          
ATOM    192  CA  ILE B  93      50.180  55.001  11.313  1.00  0.00          
ATOM    193  CA  GLY B  94      50.391  57.347   8.267  1.00  0.00          
ATOM    194  CA  CYS B  95      50.613  54.716   5.473  1.00  0.00          
ATOM    195  CA  THR B  96      50.713  55.903   1.945  1.00  0.00          
ATOM    196  CA  LEU B  97      51.039  54.052  -1.392  1.00  0.00          
ATOM    197  CA  ASN B  98      53.860  55.612  -3.315  1.00  0.00          
ATOM    198  CA  PHE B  99      55.089  55.232  -6.899  1.00  0.00          
TER   
END