/usr/lib/R/site-library/bio3d/matrices/emboss_properties.mat is in r-other-bio3d 1.1-5-1build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 | # EMBOSS DATA FILE
#
# This file contains the chemical classifications of the common amino
# acids.
#
#
#
#
#
# aromatic polar positive
# Tiny Small aliphatic non-polar charged negative
A 1 1 0 0 1 0 0 0 0
C 1 1 0 0 1 0 0 0 0
D 0 1 0 0 0 1 1 0 1
E 0 0 0 0 0 1 1 0 1
F 0 0 0 1 1 0 0 0 0
G 1 1 0 0 1 0 0 0 0
H 0 0 0 1 0 1 1 1 0
I 0 0 1 0 1 0 0 0 0
K 0 0 0 0 0 1 1 1 0
L 0 0 1 0 1 0 0 0 0
M 0 0 0 0 1 0 0 0 0
N 0 1 0 0 0 1 0 0 0
P 0 1 0 0 1 0 0 0 0
Q 0 0 0 0 0 1 0 0 0
R 0 0 0 0 0 1 1 1 0
S 1 1 0 0 0 1 0 0 0
T 1 1 0 0 0 1 0 0 0
V 0 1 1 0 1 0 0 0 0
W 0 0 0 1 1 0 0 0 0
Y 0 0 0 1 1 0 0 0 0
//
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