/usr/share/ray/scripts/xsl-xml/SequenceAbundances-to-html.xsl is in ray-extra 2.3.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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<xsl:stylesheet version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform">
<xsl:template match="/">
<html>
<head>
<style>
body{
font-family: Arial;
}
.taxon{
border-style:solid;
background: #FFFF33;
margin-top:50px;
margin-bottom:50px;
margin-right:50px;
margin-left:50px;
padding-top:30px;
padding-bottom:30px;
padding-right:30px;
padding-left:30px;
}
.name{
font-size: 24px;
}
.observations{
padding-top:10px;
padding-bottom:10px;
padding-right:10px;
padding-left:10px;
}
.proportion{
color: white;
background: black;
border-color: white;
font-size: 48px;
border-style:solid;
padding-top:5px;
padding-bottom:5px;
padding-right:5px;
padding-left:5px;
}
</style>
<title>
Sample: <xsl:value-of select="root/sample"/>
</title>
</head>
<body>
<h1>Sample: <xsl:value-of select="root/sample"/></h1>
<h2>Demultiplexed biological abundances from BiologicalAbundances/<xsl:value-of select="root/searchDirectory"/>/BiologicalAbundances.xml</h2>
<h2>Produced by Ray technologies</h2>
<div>
Total assembled k-mer observations:
<xsl:value-of select="root/totalAssembledKmerObservations"/>
</div>
<xsl:for-each select="root/entry">
<xsl:if test="demultiplexedKmerObservations/text() != '0'">
<div class="taxon">
<div>
<span class="name">
<xsl:value-of select="file"/><br />
<xsl:value-of select="name"/>
</span>
<xsl:text disable-output-escaping="yes">&nbsp;</xsl:text>
<span class="proportion"><xsl:value-of select="100* proportion"/>%</span>
</div>
<div class="observations">
Demultiplexed k-mer observations:
<xsl:value-of select="demultiplexedKmerObservations"/> / <xsl:value-of select="/root/totalAssembledKmerObservations"/>
</div>
</div>
</xsl:if>
</xsl:for-each>
</body>
</html>
</xsl:template>
</xsl:stylesheet>
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