/usr/include/seqan/pipe/pipe_counter.h is in seqan-dev 1.3.1-1.
This file is owned by root:root, with mode 0o644.
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// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2010, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: David Weese <david.weese@fu-berlin.de>
// ==========================================================================
#ifndef SEQAN_HEADER_PIPE_COUNTER_H
#define SEQAN_HEADER_PIPE_COUNTER_H
namespace SEQAN_NAMESPACE_MAIN
{
//namespace SEQAN_NAMESPACE_PIPELINING
//{
struct Counter;
template < typename TInput >
struct Value< Pipe< TInput, Counter > > {
typedef Pair<
typename Value<TInput>::Type,
typename Size<TInput>::Type,
Compressed
> Type;
};
/**
.Spec.Counter:
..cat:Pipelining
..general:Class.Pipe
..summary:Extends the input stream by a second field which enumerates the elements.
..signature:Pipe<TInput, Counter>
..param.TInput:The type of the pipeline module this module reads from.
..remarks:The output type is a @Class.Pair@ of input type and size type (i.e. $Pair<Value<TInput>::Type, Size<TInput>::Type>$).
..remarks:The first output field is the original input stream.
..remarks:The second output field begins with 0 and increases by 1 per element.
..include:seqan/pipe.h
*/
//////////////////////////////////////////////////////////////////////////////
// counter class
template < typename TInput >
struct Pipe< TInput, Counter >
{
TInput ∈
typename Value<Pipe>::Type tmp;
Pipe(TInput& _in):
in(_in) {}
inline typename Value<Pipe>::Type const & operator*() {
tmp.i1 = *in;
return tmp;
}
inline Pipe& operator++() {
++in;
++tmp.i2;
return *this;
}
};
//////////////////////////////////////////////////////////////////////////////
// global pipe functions
template < typename TInput >
inline bool control(Pipe< TInput, Counter > &me, ControlBeginRead const &command) {
if (!control(me.in, command)) return false;
me.tmp.i2 = 0;
return true;
}
//}
}
#endif
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