seqan-dev 1.3.1-1 / usr / include / seqan / sequence / string_array.h

// ==========================================================================
//                 SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2010, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
//     * Redistributions of source code must retain the above copyright
//       notice, this list of conditions and the following disclaimer.
//     * Redistributions in binary form must reproduce the above copyright
//       notice, this list of conditions and the following disclaimer in the
//       documentation and/or other materials provided with the distribution.
//     * Neither the name of Knut Reinert or the FU Berlin nor the names of
//       its contributors may be used to endorse or promote products derived
//       from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Andreas Gogol-Doering <andreas.doering@mdc-berlin.de>
// ==========================================================================
// Implementation of constant-sized Array String class.
// ==========================================================================

#ifndef SEQAN_HEADER_SEQUENCE_STRING_ARRAY_H
#define SEQAN_HEADER_SEQUENCE_STRING_ARRAY_H

namespace seqan {

// ============================================================================
// Forwards
// ============================================================================

// ============================================================================
// Tags, Classes, Enums
// ============================================================================

/**
.Spec.Array String:
..cat:Strings
..general:Class.String
..summary:Fast, static-size string.
..remarks:This is useful as members of structs for external memory algorithms, for example.
..signature:String<TValue, Array<LENGTH> >
..param.TValue:The value type, that is the type of the items/characters stored in the string.
...remarks:Use @Metafunction.Value@ to get the value type for a given class.
..param.LENGTH:A positive integer that specifies the capacity of the string.
...remarks:Note that the capacity of an Array String is fixed at compile-time.
..include:seqan/sequence.h
*/
//////////////////////////////////////////////////////////////////////////////

template <unsigned int LENGTH>
struct Array;

//////////////////////////////////////////////////////////////////////////////

template <typename TValue, unsigned int LENGTH>
class String<TValue, Array<LENGTH> >
{
public:
    mutable TValue data_begin[LENGTH];
    TValue * data_end;

//____________________________________________________________________________

public:
    String()
    {
SEQAN_CHECKPOINT
        data_end = data_begin;
    }

    template <typename TSource>
    String(TSource & source)
    {
SEQAN_CHECKPOINT
        data_end = data_begin;
        assign(*this, source);
    }
    template <typename TSource>
    String(TSource const & source)
    {
SEQAN_CHECKPOINT
        data_end = data_begin;
        assign(*this, source);
    }
    String(String const & source)
    {
SEQAN_CHECKPOINT
        data_end = data_begin;
        assign(*this, source);
    }

    template <typename TSource>
    String & operator =(TSource const & source)
    {
SEQAN_CHECKPOINT
        assign(*this, source);
        return *this;
    }
    String & operator =(String const & source)
    {
SEQAN_CHECKPOINT
        assign(*this, source);
        return *this;
    }

    ~String()
    {
    }

//____________________________________________________________________________

    template <typename TPos>
    inline typename Reference<String>::Type
    operator [] (TPos pos)
    {
SEQAN_CHECKPOINT
        return value(*this, pos);
    }

    template <typename TPos>
    inline typename Reference<String const>::Type
    operator [] (TPos pos) const
    {
SEQAN_CHECKPOINT
        return value(*this, pos);
    }

//____________________________________________________________________________


};

// ============================================================================
// Metafunctions
// ============================================================================

// ============================================================================
// Functions
// ============================================================================

template <typename TValue, unsigned int LENGTH>
inline typename Iterator<String<TValue, Array<LENGTH> >, Standard>::Type
begin(String<TValue, Array<LENGTH> > & me,
    Standard)
{
SEQAN_CHECKPOINT
    return me.data_begin;
}
template <typename TValue, unsigned int LENGTH>
inline typename Iterator<String<TValue, Array<LENGTH> > const, Standard>::Type
begin(String<TValue, Array<LENGTH> > const & me,
    Standard)
{
SEQAN_CHECKPOINT
    return me.data_begin;
}

//____________________________________________________________________________

template <typename TValue, unsigned int LENGTH>
inline typename Iterator<String<TValue, Array<LENGTH> >, Standard>::Type
end(String<TValue, Array<LENGTH> > & me,
    Standard)
{
SEQAN_CHECKPOINT
    return me.data_end;
}
template <typename TValue, unsigned int LENGTH>
inline typename Iterator<String<TValue, Array<LENGTH> > const, Standard>::Type
end(String<TValue, Array<LENGTH> > const & me,
    Standard)
{
SEQAN_CHECKPOINT
    return me.data_end;
}

//____________________________________________________________________________

template <typename TValue, unsigned int LENGTH>
inline size_t
capacity(String<TValue, Array<LENGTH> > &)
{
SEQAN_CHECKPOINT
    return LENGTH;
}

template <typename TValue, unsigned int LENGTH>
inline size_t
capacity(String<TValue, Array<LENGTH> > const &)
{
SEQAN_CHECKPOINT
    return LENGTH;
}
//____________________________________________________________________________

template <typename TValue, unsigned int LENGTH, typename TExpand>
inline size_t
reserve(
    String<TValue, Array<LENGTH> > & me,
    size_t,
    Tag<TExpand> const)
{
SEQAN_CHECKPOINT
    return capacity(me);
}


//____________________________________________________________________________

/**
.Internal._setLength.param.object.type:Spec.Array String
*/
template <typename TValue, unsigned int LENGTH>
inline void
_setLength(
    String<TValue, Array<LENGTH> > & me,
    size_t new_length)
{
SEQAN_CHECKPOINT
    me.data_end = me.data_begin + new_length;
}

//////////////////////////////////////////////////////////////////////////////

template <typename TValue, unsigned int LENGTH>
struct DefaultOverflowImplicit<String<TValue, Array<LENGTH> > >
{
    typedef Limit Type;
};

template <typename TValue, unsigned int LENGTH>
struct DefaultOverflowImplicit<String<TValue, Array<LENGTH> > const >
{
    typedef Limit Type;
};

//////////////////////////////////////////////////////////////////////////////

template <typename TValue, unsigned int LENGTH>
struct DefaultOverflowExplicit<String<TValue, Array<LENGTH> > >
{
    typedef Limit Type;
};

template <typename TValue, unsigned int LENGTH>
struct DefaultOverflowExplicit<String<TValue, Array<LENGTH> > const >
{
    typedef Limit Type;
};

//////////////////////////////////////////////////////////////////////////////

template <typename TValue, unsigned int LENGTH>
struct IsContiguous< String<TValue, Array<LENGTH> > >
{
    typedef True Type;
    enum { VALUE = true };
};

//////////////////////////////////////////////////////////////////////////////

///.Metafunction.LENGTH.param.T.type:Spec.Array String
template <typename TValue, unsigned int LENGTH_>
struct LENGTH< String<TValue, Array<LENGTH_> > >
{
    enum { VALUE = LENGTH_ };
};

//////////////////////////////////////////////////////////////////////////////

} // namespace seqan

#endif //#ifndef SEQAN_HEADER_...