/usr/include/seqan/system/system_thread.h is in seqan-dev 1.3.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2010, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: David Weese <david.weese@fu-berlin.de>
// ==========================================================================
//SEQAN_NO_GENERATED_FORWARDS: no forwards are generated for this file
#ifndef SEQAN_HEADER_SYSTEM_THREAD_H
#define SEQAN_HEADER_SYSTEM_THREAD_H
namespace SEQAN_NAMESPACE_MAIN
{
#ifdef PLATFORM_WINDOWS
static SECURITY_ATTRIBUTES ThreadDefaultAttributes = {
sizeof(SECURITY_ATTRIBUTES),
NULL,
true
};
template <typename Worker>
struct Thread
{
typedef HANDLE Handle;
Handle hThread;
DWORD hThreadID;
Worker worker;
Thread() {}
template <typename TArg>
Thread(TArg &arg):
worker(arg) {}
~Thread() {
if (*this) {
cancel();
wait();
}
}
inline bool open(BOOL initital = false) {
return hThread = CreateThread(
&ThreadDefaultAttributes, // default security attributes
0, // use default stack size
&_start, // thread function
this, // argument to thread function
0, // use default creation flags
&hThreadID); // returns the thread identifier
}
inline bool close() {
if (CloseHandle(hThread)) return true;
hThread = NULL;
return false;
}
inline bool cancel(DWORD exitCode = 0) {
return !TerminateThread(hThread, exitCode);
}
inline bool wait(DWORD timeout_millis = INFINITE) {
return WaitForSingleObject(hThread, timeout_millis) != WAIT_TIMEOUT;
}
inline operator bool() const {
return hThread != NULL;
}
private:
Thread(Thread const &) {
// resource copying is not yet supported (performance reason)
// it needs a reference counting technique
}
static DWORD WINAPI _start(LPVOID _this) {
reinterpret_cast<Thread*>(_this)->worker.run(&reinterpret_cast<Thread*>(_this));
return 0; // return value should indicate success/failure
}
};
#else
template <typename Worker>
struct Thread
{
typedef pthread_t* Handle;
pthread_t data, *hThread;
Worker worker;
Thread() {}
template <typename TArg>
Thread(TArg &arg):
worker(arg) {}
~Thread() {
if (*this) {
cancel();
wait();
}
}
inline bool open()
{
if (!pthread_create(&data, NULL, _start, this) && (hThread = &data)) {
return true;
} else
return false;
}
inline bool close() {
return cancel() && wait() && !(hThread == NULL);
}
inline bool cancel() {
return !(pthread_cancel(data));
}
inline bool wait() {
return !(pthread_join(data, NULL));
}
inline bool wait(void* &retVal) {
return !(pthread_join(data, &retVal));
}
inline bool detach() {
return !(pthread_detach(data));
}
inline operator bool() const {
return hThread != NULL;
}
private:
Thread(Thread const &) {
// resource copying is not yet supported (performance reason)
// it needs a reference counting technique
}
static void* _start(void* _this) {
reinterpret_cast<Thread*>(_this)->worker.run(&reinterpret_cast<Thread*>(_this));
return 0;
}
};
#endif
//////////////////////////////////////////////////////////////////////////////
// global thread functions
template <typename TWorker>
inline bool open(Thread<TWorker> &m) {
return m.open();
}
template <typename TWorker>
inline bool run(Thread<TWorker> &m) {
return m.open();
}
template <typename TWorker>
inline bool close(Thread<TWorker> &m) {
return m.close();
}
template <typename TWorker>
inline bool kill(Thread<TWorker> &m) {
return m.close();
}
template <typename TWorker>
inline bool waitFor(Thread<TWorker> &m) {
return m.wait();
}
}
#endif
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