/usr/share/doc/t-coffee-examples/3d_sample4.aln is in t-coffee-examples 10.00.r1613-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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ay...................................iakqrqisfvkshfsrqleerl.
glievqapilsrvg..dgtqdnl...sgae.............KAVQVKVK.alpd.AQF
EVVHSLAKWKRQTLGQHD....FSAGEGLYTHMKALRPDEDRLSP.LHSVYVDQWDWERV
MGDGERQfSTLKSTVEAIWAGIKATEaavseefglapflpdqihfvhsqellsrypdlda
kgreraiakdlgavflvgiggklsdghrhdvrapdyddwstpselghaglngdilvwnpv
leDAFELSSMGIRVD..............ADTLkhqlaltgdedrlelewhqall.rgem
...........PQTIGGGIGQSRLTMLLLQlphigqvqagvwpaavresvpsll......
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>1atiA
..aassldelvalckrrgfifqsseiygglqgvydygplgvelknnlkqawwrrnvyerd
dmegldasvlthrlvlhysg...heatfadpmvdnwtppryfnMMFQDLRGprggrgLLA
YLRPETAQGIFVNFKNVLdatsRKLGFGIAQIGKAFRNEITPRNFiFRVREFEQMEIEYF
VRPGEDE.YWHRYWVEERLKWWQEMG............lsre..................
...........nlvpyq.qppe........ssah.yaka...........tvdilyrfp.
.hGSLELEGIAQRTDfdlgshtkdqealgITAR.........vlrnehs......tqrla
yrdpetgkwfvPYVIEPSAGVDRGVLALLA........................eaftre
elpngeerivlklkpqlapikvaviplvknrpeiteyakrlkarllalglgrvlyedtgn
igkayrrhdevgtpfavtvdydtigqskdgttrlkdtvtvrdrdtmeqirlhvdelegfl
rerlrw
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