/usr/share/doc/t-coffee-examples/g10.aln is in t-coffee-examples 10.00.r1613-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 | CLUSTAL W (1.83) multiple sequence alignment
sp|P29786|TRY3_AEDAE -----MNQFLFVSFCALLDSAKVSAATLS-----------------SGRI
sp|P35037|TRY3_ANOGA -MISNKIAILLAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRI
sp|P03953|CFAD_MOUSE -----MHSSVYFVALVILGAAVCAAQPRG-------------------RI
sp|P20160|CAP7_HUMAN ----MTRLTVLALLAGLLASSRAGSSPLL-------------------DI
sp|P80015|CAP7_PIG -------------------------------------------------I
sp|P08246|ELNE_HUMAN -MTLGRRLACLFLACVLPALLLGGTALAS-------------------EI
sp|Q00871|CTRB1_PENVA ----MIGKLSLLLVCVAVASGNPAAGKPWHWKSPKPLVDPRIHVNATPRI
sp|P07338|CTRB1_RAT ------MAFLWLVSCFALVGATFGCG--------VPTIQP--VLTGLSRI
sp|P00773|ELA1_RAT -------MLRFLVFASLVLYGHSTQD----------------FPETNARV
sp|Q06606|GRZ2_RAT --------MFLFLFFLVAILPVNTEG---------------------GEI
sp|P08884|GRAE_MOUSE --------MPPVLILLTLLLPLGAGA---------------------EEI
sp|P21844|MCPT5_MOUSE -------MHLLTLHLLLLLLGSSTKA---------------------GEI
sp|O35205|GRAK_MOUSE -------MRFSSWALVSLVAGVYMSSECF-----------------HTEI
sp|Q7YRZ7|GRAA_BOVIN -MNIPFPFSFPPAICLLLIPGVFPVS--------------------CEGI
sp|Q9Y5K2|KLK4_HUMAN MATAGNPWGWFLG-YLILGVAGSLVS-GS-----------------CSQI
sp|Q91VE3|KLK7_MOUSE MG------VWLLS-LITVLLSLALETAGQ-----------------GERI
sp|Q6H321|KLK2_HORSE --------MWFLVLCLDLSLGETGALPPI-----------------QSRI
sp|P00757|KLKB4_MOUSE --------MWFLILFLALSLGGIDAAPPV-----------------QSQV
sp|Q03238|GRAM_RAT ------------LLLLLALKTLWAVGNRF-----------------EAQI
:
sp|P29786|TRY3_AEDAE VGGFQIDIAEVPHQVSLQRSGR----HFCGGSIISPRWVLTRAHCTTNTD
sp|P35037|TRY3_ANOGA VGGFEIDVSETPYQVSLQYFNS----HRCGGSVLNSKWILTAAHCTVNLQ
sp|P03953|CFAD_MOUSE LGGQEAAAHARPYMASVQVNGT----HVCGGTLLDEQWVLSAAHCMDGVT
sp|P20160|CAP7_HUMAN VGGRKARPRQFPFLASIQNQGR----HFCGGALIHARFVMTAASCFQSQN
sp|P80015|CAP7_PIG VGGRRAQPQEFPFLASIQKQGR----PFCAGALVHPRFVLTAASCFRGKN
sp|P08246|ELNE_HUMAN VGGRRARPHAWPFMVSLQLRGG----HFCGATLIAPNFVMSAAHCVANVN
sp|Q00871|CTRB1_PENVA VGGVEATPHSWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCM---D
sp|P07338|CTRB1_RAT VNGEDAIPGSWPWQVSLQDKTG---FHFCGGSLISEDWVVTAAHCG---V
sp|P00773|ELA1_RAT VGGAEARRNSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCV---S
sp|Q06606|GRZ2_RAT IWGTESKPHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCN----
sp|P08884|GRAE_MOUSE IGGHVVKPHSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCR----
sp|P21844|MCPT5_MOUSE IGGTECIPHSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCA----
sp|O35205|GRAK_MOUSE IGGREVQPHSRPFMASIQYRS----KHICGGVLIHPQWVLTAAHCYSWFP
sp|Q7YRZ7|GRAA_BOVIN IGGNEVAPHTRRYMALIKG------LKLCAGALIKENWVLTAAHCD---L
sp|Q9Y5K2|KLK4_HUMAN INGEDCSPHSQPWQAALVMEN----ELFCSGVLVHPQWVLSAAHCF----
sp|Q91VE3|KLK7_MOUSE IDGYKCKEGSHPWQVALLKGN----QLHCGGVLVDKYWVLTAAHCK----
sp|Q6H321|KLK2_HORSE IGGWECEKHSKPWQVAVYHQG----HFQCGGVLVHPQWVLTAAHCM----
sp|P00757|KLKB4_MOUSE D----CE-NSQPWHVAVYRFN----KYQCGGVLLDRNWVLTAAHCY----
sp|Q03238|GRAM_RAT IGGREAVPHSRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLS--E
: *.. :: ::: * *
sp|P29786|TRY3_AEDAE PA-AYTIRAGSTDRTNGG----IIVKVKSVIPHPQYNGDTYNY-------
sp|P35037|TRY3_ANOGA PS-SLAVRLGSSRHASGG----TVVRVARVLEHPNYDDSTIDY-------
sp|P03953|CFAD_MOUSE DDDSVQVLLGAHSLSAPEP-YKRWYDVQSVVPHPGSRPDSLED-------
sp|P20160|CAP7_HUMAN PG-VSTVVLGAYDLRRRER-QSRQTFSISSMSENGYDPQQNLN-------
sp|P80015|CAP7_PIG SG-SASVVLGAYDLRQQE--QSRQTFSIRSISQNGYDPRQNLN-------
sp|P08246|ELNE_HUMAN VR-AVRVVLGAHNLSRRE--PTRQVFAVQRIFENGYDPVNLLN-------
sp|Q00871|CTRB1_PENVA GAGFVEVVLGAHNIRQNEA-SQVSITSTDFFTHENWNSWLLTN-------
sp|P07338|CTRB1_RAT KT-SDVVVAGEFDQGSDEE-NIQVLKIAQVFKNPKFNMFTVRN-------
sp|P00773|ELA1_RAT SQMTFRVVVGDHNLSQNDG-TEQYVSVQKIMVHPTWNSNNVAAG------
sp|Q06606|GRZ2_RAT -GRNIKVTLGAHNIK-KQ-ENTQVISVVKAKPHENYDRDSH---------
sp|P08884|GRAE_MOUSE -NRTMTVTLGAHNIKAKE-ETQQIIPVAKAIPHPDYNATAF---------
sp|P21844|MCPT5_MOUSE -GRSITVLLGAHNKTSKE-DTWQKLEVEKQFLHPKYDENLV---------
sp|O35205|GRAK_MOUSE RGHSPTVVLGAHSLSKNE-PMKQTFEIKKFIPFSRLQSGSA---------
sp|Q7YRZ7|GRAA_BOVIN KGN-PQVILGAHSTSHKE-KLDQVFSIKKAIPYPCFDPQTF---------
sp|Q9Y5K2|KLK4_HUMAN -QNSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLL---------
sp|Q91VE3|KLK7_MOUSE -MGQYQVQLGSDKIG-DQ--SAQKIKATKSFRHPGYSTKTH---------
sp|Q6H321|KLK2_HORSE -SDDYQIWLGRHNLSEDE-DTAQFHQVSDSFLDPQFDLSLLKKKYLRPYD
sp|P00757|KLKB4_MOUSE -NDKYQVWLGKNNFLEDE-PSDQHRLVSKAIPHPDFNMSLLNEHTPQPED
sp|Q03238|GRAM_RAT PLQQLKLVFGLHSLHDPQ-DPGLTFYIKQAIKHPGYNLKYEN--------
: *
sp|P29786|TRY3_AEDAE ----DFSLLELDESIGFSRSIEAIALPD-ASETVADGAMCTVSGWGDTKN
sp|P35037|TRY3_ANOGA ----DFSLMELESELTFSDVVQPVSLPD-QDEAVEDGTMTIVSGWGNTQS
sp|P03953|CFAD_MOUSE ----DLILFKLSQNASLGPHVRPLPLQY-EDKEVEPGTLCDVAGWGVVTH
sp|P20160|CAP7_HUMAN ----DLMLLQLDREANLTSSVTILPLPL-QNATVEAGTRCQVAGWGSQRS
sp|P80015|CAP7_PIG ----DVLLLQLDREARLTPSVALVPLPP-QNATVEAGTNCQVAGWGTQRL
sp|P08246|ELNE_HUMAN ----DIVILQLNGSATINANVQVAQLPA-QGRRLGNGVQCLAMGWGLLGR
sp|Q00871|CTRB1_PENVA ----DIALIRLPSPVSLNSNIKTVKLP---SSDVSVGTTVTPTGWGRPSD
sp|P07338|CTRB1_RAT ----DITLLKLATPAQFSETVSAVCLPN-VDDDFPPGTVCATTGWGKTKY
sp|P00773|ELA1_RAT ---YDIALLRLAQSVTLNNYVQLAVLPQ-EGTILANNNPCYITGWGRTRT
sp|Q06606|GRZ2_RAT --FNDIMLLKLERKAQLNGVVKTIALPR-SQDWVKPGQVCTVAGWG--RL
sp|P08884|GRAE_MOUSE --FSDIMLLKLESKAKRTKAVRPLKLPR-PNARVKPGDVCSVAGWGSRSI
sp|P21844|MCPT5_MOUSE --VHDIMLLKLKEKAKLTLGVGTLPLSA-NFNFIPPGRMCRAVGWG-RTN
sp|O35205|GRAK_MOUSE --SHDIMLIKLRTAAELNKNVQLLHLG--SKNYLRDGTKCQVTGWGTTKP
sp|Q7YRZ7|GRAA_BOVIN --EGDLQLLQLEGKATMTKAVGILQLPR-TEDDVKPHTKCHVAGWGSTKK
sp|Q9Y5K2|KLK4_HUMAN --ANDLMLIKLDESVSESDTIRSISIAS-QCPTA--GNSCLVSGWGLLAN
sp|Q91VE3|KLK7_MOUSE --VNDIMLVRLDEPVKMSSKVEAVQLPE-HCEPP--GTSCTVSGWGTTTS
sp|Q6H321|KLK2_HORSE DISHDLMLLRLAQPARITDAVKILDLPT-QEPKL--GSTCYTSGWGLIST
sp|P00757|KLKB4_MOUSE DYSNDLMLLRLSKPADITDVVKPITLPT-EEPKL--GSTCLASGWGSTTP
sp|Q03238|GRAM_RAT ----DLALLKLDGRVKPSKNVKPLALPRKPRDKPAEGSRCSTAGWG-ITH
*. :..* : : ***
sp|P29786|TRY3_AEDAE VF-EMNTLLRAVNVPSYNQAECAAALV--NVVPVTEQMICAGYAAGGKDS
sp|P35037|TRY3_ANOGA AA-ESNAILRAANVPTVNQKECTIAYS--SSGGITDRMLCAGYKRGGKDA
sp|P03953|CFAD_MOUSE AG-RRPDVLHQLRVSIMNRTTCNLRTY--HDGVVTINMMCAESNR--RDT
sp|P20160|CAP7_HUMAN GG-RLSRFPRFVNVTVTPEDQCRPNN------------VCTGVLTRRGGI
sp|P80015|CAP7_PIG RR-LFSRFPRVLNVTVTS-NPCLPRD------------MCIGVFSRRGRI
sp|P08246|ELNE_HUMAN NR-GIASVLQELNVTVVT-SLCRRSN------------VCTLVRGRQAGV
sp|Q00871|CTRB1_PENVA SASGISDVLRQVNVPVMTNADCDSV-----YGIVGDGVVCIDGTGGK-ST
sp|P07338|CTRB1_RAT NALKTPEKLQQAALPIVSEADCKKS-----WGSKITDVMTCAGASGV-SS
sp|P00773|ELA1_RAT NG-QLSQTLQQAYLPSVDYSICSSSSY---WGSTVKTTMVCAGGDGVRSG
sp|Q06606|GRZ2_RAT ANCTSSNTLQEVNLEVQKGQKCQD----MSEDYNDSIQLCVGNPSEGKAT
sp|P08884|GRAE_MOUSE NDTKASARLREAQLVIQEDEECKK----RFRHYTETTEICAGDLKKIKTP
sp|P21844|MCPT5_MOUSE VNEPASDTLQEVKMRLQEPQACK-----HFTSFRHNSQLCVGNPKKMQNV
sp|O35205|GRAK_MOUSE DLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAGDARGQKDS
sp|Q7YRZ7|GRAA_BOVIN DACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSMICAGGRKGEDDS
sp|Q9Y5K2|KLK4_HUMAN --GRMPTVLQCVNVSVVSEEVCSK----LYDPLYHPSMFCAGGGQDQKDS
sp|Q91VE3|KLK7_MOUSE PDVTFPSDLMCSDVKLISSRECKK----VYKDLLGKTMLCAGIPDSKTNT
sp|Q6H321|KLK2_HORSE FTNRGSGTLQCVELRLQSNEKCAR----AYPEKMTEFVLCATHRDDSGSI
sp|P00757|KLKB4_MOUSE IKFKYPDDLQCVNLKLLPNEDCDK----AHEMKVTDAMLCAGEMDGGSYT
sp|Q03238|GRAM_RAT QRGQLAKSLQELDLRLLDTRMCNNSR--FWNGVLTDSMLCLKAGAKGQAP
: * .
sp|P29786|TRY3_AEDAE CQGDSGGPLVSGD----KLVGVVSWG-KGCALPN-LPGVYARVST-VRQW
sp|P35037|TRY3_ANOGA CQGDSGGPLVVDG----KLVGVVSWG-FGCAMPG-YPGVYARVAV-VRDW
sp|P03953|CFAD_MOUSE CRGDSGSPLVCGD----AVEGVVTWGSRVCGNGK-KPGVYTRVSS-YRMW
sp|P20160|CAP7_HUMAN CNGDGGTPLVCEG----LAHGVASFSLGPCGRG---PDFFTRVAL-FRDW
sp|P80015|CAP7_PIG SQGDRGTPLVCNG----LAQGVASFLRRRFRRS---SGFFTRVAL-FRNW
sp|P08246|ELNE_HUMAN CFGDSGSPLVCNG----LIHGIASFVRGGCASGL-YPDAFAPVAQ-FVNW
sp|Q00871|CTRB1_PENVA CNGDSGGPLNLNG----MTYGITSFGSSAGCEKG-YPAAFTRVYY-YLDW
sp|P07338|CTRB1_RAT CMGDSGGPLVCQKDGVWTLAGIVSWG-SGVCSTS-TPAVYSRVTA-LMPW
sp|P00773|ELA1_RAT CQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRVSA-YISW
sp|Q06606|GRZ2_RAT GKGDSGGPFVCD----GVAQGIVSYRL-CTGTL---PRVFTRISS-FIPW
sp|P08884|GRAE_MOUSE FKGDSGGPLVCD----NKAYGLLAYAK-NRTIS---SGVFTKIVH-FLPW
sp|P21844|MCPT5_MOUSE YKGDSGGPLLCA----GIAQGIASYVH-RNAKP---PAVFTRISH-YRPW
sp|O35205|GRAK_MOUSE CKGDSGGPLICK----GIFHALVSQGY-KCGIAK-KPGIYTLLTKKYQTW
sp|Q7YRZ7|GRAA_BOVIN CEGDSGSPLICD----NVFRGVTSFG--KCGNPQ-KPGIYILLTKKHLNW
sp|Q9Y5K2|KLK4_HUMAN CNGDSGGPLICN----GYLQGLVSFGKAPCGQVG-VPGVYTNLCK-FTEW
sp|Q91VE3|KLK7_MOUSE CNGDSGGPLVCN----DTLQGLVSWGTYPCGQPN-DPGVYTQVCK-YKRW
sp|Q6H321|KLK2_HORSE CLGDSGGALICD----GVFQGITSWGYSECADFN-DNFVFTKVMP-HLKW
sp|P00757|KLKB4_MOUSE CEHDSGGPLICD----GILQGITSWGPEPCGEPT-EPSVYTKLIK-FSSW
sp|Q03238|GRAM_RAT CKGDSGGPLVCGK---GKVDGILSFSSKNCTDIF-KPTVATAVAP-YSSW
* * .: .: : : *
sp|P29786|TRY3_AEDAE IREVSEV-------------------
sp|P35037|TRY3_ANOGA VRENSGA-------------------
sp|P03953|CFAD_MOUSE IENITNGNMTS---------------
sp|P20160|CAP7_HUMAN IDGVL----NNPGPGPA---------
sp|P80015|CAP7_PIG IDSVL----NNP-P------------
sp|P08246|ELNE_HUMAN IDSIIQRSEDNPCPHPRDPDPASRTH
sp|Q00871|CTRB1_PENVA IQQKTGVTP-----------------
sp|P07338|CTRB1_RAT VQQILEAN------------------
sp|P00773|ELA1_RAT MNNVIAYT------------------
sp|Q06606|GRZ2_RAT IQKTMKVLQQS---------------
sp|P08884|GRAE_MOUSE ISRNMKLL------------------
sp|P21844|MCPT5_MOUSE INKILREN------------------
sp|O35205|GRAK_MOUSE IKSKLAPSRAH---------------
sp|Q7YRZ7|GRAA_BOVIN IKKTIAGAI-----------------
sp|Q9Y5K2|KLK4_HUMAN IEKTVQAS------------------
sp|Q91VE3|KLK7_MOUSE VMETMKTHR-----------------
sp|Q6H321|KLK2_HORSE IKETIEKNS-----------------
sp|P00757|KLKB4_MOUSE IRETMANNP-----------------
sp|Q03238|GRAM_RAT IRKVIGRWSPQPLT------------
:
|