/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm is in gbrowse-calign 2.54+dfsg-2build1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 | package Bio::Graphics::Browser2::CAlign;
use 5.005;
use Carp;
use vars qw(@ISA @EXPORT @EXPORT_OK);
use strict;
require Exporter;
require DynaLoader;
@ISA = qw(Exporter DynaLoader);
@EXPORT = ();
@EXPORT_OK = qw(align);
bootstrap Bio::Graphics::Browser2::CAlign;
sub align {
my $class = shift;
my ($src,$tgt,$matrix) = @_;
return $class->_do_alignment($src,$tgt,$matrix);
}
1;
__END__
=head1 NAME
Bio::Graphics::Browser2::CAlign - Compiled helper for Bio::Graphics::Browser::Realign
=head1 SYNOPSIS
No user serviceable parts.
=head1 DESCRIPTION
This module is used internally by Bio::Graphics::Browser2::Realign. If
the module is present, the Smith-Waterman alignment will be faster.
Otherwise, Bio::Graphics::Browser2::Realign will fall back to a slower
pure-perl implementation.
=head1 SEE ALSO
L<Bio::Graphics::Browser2::Realign>
=head1 AUTHOR
Lincoln Stein E<lt>lstein@cshl.orgE<gt>.
Copyright (c) 2003 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
=cut
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