This file is indexed.

/usr/include/gromacs/gmx_avx_single.h is in gromacs-dev 4.6.5-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
/*
 * This file is part of the GROMACS molecular simulation package.
 *
 * Copyright (c) 2012,2013, by the GROMACS development team, led by
 * David van der Spoel, Berk Hess, Erik Lindahl, and including many
 * others, as listed in the AUTHORS file in the top-level source
 * directory and at http://www.gromacs.org.
 *
 * GROMACS is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation; either version 2.1
 * of the License, or (at your option) any later version.
 *
 * GROMACS is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with GROMACS; if not, see
 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA.
 *
 * If you want to redistribute modifications to GROMACS, please
 * consider that scientific software is very special. Version
 * control is crucial - bugs must be traceable. We will be happy to
 * consider code for inclusion in the official distribution, but
 * derived work must not be called official GROMACS. Details are found
 * in the README & COPYING files - if they are missing, get the
 * official version at http://www.gromacs.org.
 *
 * To help us fund GROMACS development, we humbly ask that you cite
 * the research papers on the package. Check out http://www.gromacs.org.
 */
#ifndef _gmx_avx_single_h_
#define _gmx_avx_single_h_

/* We require AVX now! */

#include <immintrin.h> /* AVX */

static inline __m256
gmx_mm256_invsqrt_ps(__m256 x)
{
    const __m256 half  = _mm256_set_ps(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5);
    const __m256 three = _mm256_set_ps(3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0);

    __m256       lu = _mm256_rsqrt_ps(x);

    return _mm256_mul_ps(half, _mm256_mul_ps(_mm256_sub_ps(three, _mm256_mul_ps(_mm256_mul_ps(lu, lu), x)), lu));
}

static inline __m256
gmx_mm256_calc_rsq_ps(__m256 dx, __m256 dy, __m256 dz)
{
    return _mm256_add_ps( _mm256_add_ps( _mm256_mul_ps(dx, dx), _mm256_mul_ps(dy, dy) ), _mm256_mul_ps(dz, dz) );
}

/* Normal sum of four xmm registers */
#define gmx_mm256_sum4_ps(t0, t1, t2, t3)  _mm256_add_ps(_mm256_add_ps(t0, t1), _mm256_add_ps(t2, t3))

#endif /* gmx_avx_single_h_ */