/usr/include/gromacs/nsgrid.h

/*
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#include "visibility.h"
#include "typedefs.h"

#ifdef __cplusplus
extern "C" {
#endif

#define   GRID_STDDEV_FAC  sqrt(3)
#define NSGRID_STDDEV_FAC  2.0
/*
 * GRID_STDDEV_FAC * stddev is used to estimate the interaction density.
 * sqrt(3) gives a uniform load for a rectangular block of cg's.
 * For a sphere it is not a bad approximation for 4x1x1 up to 4x2x2.
 *
 * The extent of the neighborsearch grid is a bit larger than sqrt(3)
 * to account for less dense regions at the edges of the system.
 */

#define NSGRID_SIGNAL_MOVED_FAC  4
/* A cell index of NSGRID_SIGNAL_MOVED_FAC*ncells signals
 * that a charge group moved to another DD domain.
 */

GMX_LIBMD_EXPORT
t_grid *init_grid(FILE *fplog, t_forcerec *fr);

void done_grid(t_grid *grid);

void get_nsgrid_boundaries(int nboundeddim, matrix box,
                           gmx_domdec_t *dd,
                           gmx_ddbox_t *ddbox,
                           rvec *gr0, rvec *gr1,
                           int ncg, rvec *cgcm,
                           rvec grid_x0, rvec grid_x1,
                           real *grid_density);
/* Return the ns grid boundaries grid_x0 and grid_x1
 * and the estimate for the grid density.
 * For non-bounded dimensions the boundaries are determined
 * from the average and std.dev. of cgcm.
 * The are determined from box, unless gr0!=NULL or gr1!=NULL,
 * then they are taken from gr0 or gr1.
 * With dd and unbounded dimensions, the proper grid borders for cells
 * on the edges are determined from cgcm.
 */

void grid_first(FILE *log, t_grid *grid,
                gmx_domdec_t *dd, const gmx_ddbox_t *ddbox,
                int ePBC, matrix box, rvec izones_x0, rvec izones_x1,
                real rlong, real grid_density);

void fill_grid(FILE *log,
               gmx_domdec_zones_t *dd_zones,
               t_grid *grid, int ncg_tot,
               int cg0, int cg1, rvec cg_cm[]);
/* Allocates space on the grid for ncg_tot cg's.
 * Fills the grid with cg's from cg0 to cg1.
 * When cg0 is -1, contiues filling from grid->nr to cg1.
 */

void calc_elemnr(FILE *log, t_grid *grid, int cg0, int cg1, int ncg);

void calc_ptrs(t_grid *grid);

void grid_last(FILE *log, t_grid *grid, int cg0, int cg1, int ncg);

int xyz2ci_(int nry, int nrz, int x, int y, int z);
#define xyz2ci(nry, nrz, x, y, z) ((nry)*(nrz)*(x)+(nrz)*(y)+(z))
/* Return the cell index */

void ci2xyz(t_grid *grid, int i, int *x, int *y, int *z);

void check_grid(FILE *log, t_grid *grid);

void print_grid(FILE *log, t_grid *grid);

void mv_grid(t_commrec *cr, t_grid *grid);
/* Move the grid over processors */

#ifdef __cplusplus
}
#endif
gromacs-dev 4.6.5-1build1 / usr / include / gromacs / nsgrid.h
