/usr/bin/h5cc is in hdf5-helpers 1.8.11-5ubuntu7.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
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##
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
##
# This tool is adapted from the mpicc command of the MPICH Software.
############################################################################
## ##
## Things You May Have to Modify: ##
## ##
## If the following paths don't point to the place were HDF5 is installed ##
## on your system (i.e., you received a binary distribution or moved the ##
## files from the originally installed directory to another directory) ##
## then modify them accordingly to represent the new paths. ##
## ##
############################################################################
prefix="/usr"
exec_prefix="${prefix}"
libdir="${prefix}/lib/x86_64-linux-gnu"
includedir="${prefix}/include"
HL="hl"
############################################################################
## ##
## Things You Can Modify to Override HDF5 Library Build Components: ##
## ##
## (Advanced usage - know what you're doing - you're on your own here.) ##
## The four variables below can be used to insert paths and flags in ##
## CPPFLAGS, CFLAGS, LDFLAGS, or LIBS in the h5cc compile line: ##
## $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS ##
## $LIBS $clibpath $link_objs $link_args $shared_link ##
## ##
## These settings can be overriden by setting HDF5_CFLAGS, ##
## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment. ##
## ##
############################################################################
CFLAGSBASE=""
CPPFLAGSBASE=""
LDFLAGSBASE=""
LIBSBASE=""
############################################################################
## ##
## You shouldn't have to modify anything below this line. ##
## ##
############################################################################
# Constants definitions
EXIT_SUCCESS=0
EXIT_FAILURE=1
host_os="linux-gnu"
prog_name="`basename $0`"
allargs=""
compile_args=""
libraries=""
link_args=""
link_objs=""
clibpath=""
do_link="yes"
do_compile="no"
dash_o="no"
dash_c="no"
get_output_file="no"
SHOW="eval"
CCBASE="/usr/bin/cc"
CLINKERBASE="/usr/bin/cc"
# CFLAGS, CPPFLAGS and LDFLAGS are reserved for use by the script user.
# FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS.
# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts to override
# them. User's LDFLAGS come just before clibpath, user's LIBS come after
# $link_objs and before the hdf5 libraries in $link_args, followed by any
# external library paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS
# or LIBS carried in from the hdf5 build.
H5BLD_CFLAGS=" -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security"
H5BLD_CPPFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE -D_FORTIFY_SOURCE=2"
H5BLD_LDFLAGS=" -Wl,-Bsymbolic-functions -Wl,-z,relro"
H5BLD_LIBS=" -lpthread -lz -ldl -lm "
CC="${HDF5_CC:-$CCBASE}"
CLINKER="${HDF5_CLINKER:-$CLINKERBASE}"
CFLAGS="${HDF5_CFLAGS:-$CFLAGSBASE}"
CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}"
LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
LIBS="${HDF5_LIBS:-$LIBSBASE}"
USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
usage() {
# A wonderfully informative "usage" message.
echo "usage: $prog_name [OPTIONS] <compile line>"
echo " OPTIONS:"
echo " -help This help message."
echo " -echo Show all the shell commands executed"
echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/"
echo " subdirectories [default: $prefix]"
# A wonderfully informative "usage" message.
echo "usage: $prog_name [OPTIONS] <compile line>"
echo " OPTIONS:"
echo " -help This help message."
echo " -echo Show all the shell commands executed"
echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/"
echo " subdirectories [default: $prefix]"
echo " -show Show the commands without executing them"
echo " -showconfig Show the HDF5 library configuration summary"
echo " -shlib Compile with shared HDF5 libraries"
echo " -noshlib Compile with static HDF5 libraries [default]"
echo " "
echo " <compile line> - the normal compile line options for your compiler."
echo " $prog_name uses the same compiler you used to compile"
echo " HDF5. Check with your compiler's man pages for more"
echo " information on which options are needed."
echo " "
echo " You can override the compiler, linker, and whether or not to use static"
echo " or shared libraries to compile your program by setting the following"
echo " environment variables accordingly:"
echo " "
echo " HDF5_CC - use a different C compiler"
echo " HDF5_CLINKER - use a different linker"
echo " HDF5_USE_SHLIB=[yes|no] - use shared or static version of the HDF5 library"
echo " [default: no]"
echo " "
echo " You can also add or change paths and flags to the compile line using"
echo " the following environment varibles or by assigning them to their counterparts"
echo " in the 'Things You Can Modify to Override...'" section of $prog_name
echo " "
echo " Variable Current value to be replaced"
echo " HDF5_CPPFLAGS \"$CPPFLAGSBASE\""
echo " HDF5_CFLAGS \"$CFLAGSBASE\""
echo " HDF5_LDFLAGS \"$LDFLAGSBASE\""
echo " HDF5_LIBS \"$LIBSBASE\""
echo " "
echo " Note that adding library paths to HDF5_LDFLAGS where another hdf5 version"
echo " is located may link your program with that other hdf5 library version."
echo " "
exit $EXIT_FAILURE
}
# Show the configuration summary of the library recorded in the
# libhdf5.settings file reside in the lib directory.
showconfigure()
{
cat ${libdir}/libhdf5.settings
status=$?
}
# Main
status=$EXIT_SUCCESS
if test "$#" = "0"; then
# No parameters specified, issue usage statement and exit.
usage
fi
case "$CC" in
gcc)
kind="gcc"
;;
mpicc|mpcc|mpicc_r)
# Is this gcc masquarading as an MPI compiler?
if test "`${CC} -v 2>&1 | sed -n 2p | cut -c1-3`" = "gcc"; then
kind="gcc"
else
# Nope
kind="$host_os"
fi
;;
*)
kind="$host_os"
;;
esac
for arg in $@ ; do
if test "x$get_output_file" = "xyes"; then
link_args="$link_args $arg"
output_file="$arg"
get_output_file="no"
continue
fi
case "$arg" in
-c)
allargs="$allargs $arg"
compile_args="$compile_args $arg"
if test "x$do_link" = "xyes" -a -n "$output_file"; then
compile_args="$compile_args -o $outputfile"
fi
do_link="no"
dash_c="yes"
;;
-o)
allargs="$allargs $arg"
dash_o="yes"
if test "x$dash_c" = "xyes"; then
compile_args="$compile_args $arg"
else
link_args="$link_args $arg"
do_link="yes"
get_output_file="yes"
fi
;;
-E|-M|-MT)
allargs="$allargs $arg"
compile_args="$compile_args $arg"
dash_c="yes"
do_link="no"
;;
-l*)
libraries=" $libraries $arg "
allargs="$allargs $arg"
;;
-prefix=*)
prefix="`expr "$arg" : '-prefix=\(.*\)'`"
;;
-echo)
set -x
;;
-show)
SHOW="echo"
;;
-showconfig)
showconfigure
exit $status
;;
-shlib)
USE_SHARED_LIB="yes"
;;
-noshlib)
USE_SHARED_LIB="no"
;;
-help)
usage
;;
*\"*)
qarg="'"$arg"'"
allargs="$allargs $qarg"
;;
*\'*)
qarg='\"'"$arg"'\"'
allargs="$allargs $qarg"
;;
*)
allargs="$allargs $qarg"
if test -s "$arg"; then
ext=`expr "$arg" : '.*\(\..*\)'`
if test "x$ext" = "x.c"; then
do_compile="yes"
compile_args="$compile_args $arg"
fname=`basename $arg .c`
link_objs="$link_objs $fname.o"
elif test "x$ext" = "x.o"; then
if test "x$dash_c" = "xyes"; then
compile_args="$compile_args $arg"
else
do_link="yes"
link_objs="$link_objs $arg"
fi
elif test "x$ext" = "x.a"; then
# This is an archive that we're linking in
libraries=" $libraries $arg "
else
compile_args="$compile_args $arg"
link_args="$link_args $arg"
fi
else
compile_args="$compile_args $arg"
link_args="$link_args $arg"
fi
;;
esac
done
if test "$dash_c" = "yes" -a "$do_compile" = no -a "$do_link" = no ; then
# -c was specified. Force do_compile on.
do_compile=yes
fi
if test "x$do_compile" = "xyes"; then
if test "x$dash_c" != "xyes"; then
compile_args="-c $compile_args"
fi
$SHOW $CC -I$includedir $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $compile_args
status=$?
if test "$status" != "0"; then
exit $status
fi
fi
if test "x$do_link" = "xyes"; then
shared_link=""
# conditionnaly link with the hl library
if test "X$HL" = "Xhl"; then
libraries=" $libraries -lhdf5_hl -lhdf5 "
else
libraries=" $libraries -lhdf5 "
fi
link_args="$link_args -L${libdir}"
case "$kind" in
gcc|linux*)
# MacOS X doesn't support the "-Wl,-rpath -Wl," style of linker flags.
# It appears to want none of them specified.
case "$host_os" in
darwin*) flag="" ;;
*) flag="-Wl,-rpath -Wl," ;;
esac
;;
hpux*) flag="-Wl,+b -Wl," ;;
freebsd*|solaris*) flag="-R" ;;
rs6000*|aix*) flag="-L" ;;
irix*|sgi) flag="-rpath " ;;
*) flag="" ;;
esac
if test -n "$flag"; then
shared_link="${flag}${libdir}"
fi
if test "x$USE_SHARED_LIB" != "xyes"; then
# The "-lhdf5" & "-lhdf5_hl" flags are in here already...This is a static
# compile though, so change it to the static version (.a) of the library.
new_libraries=""
for lib in $libraries; do
case "$lib" in
-lhdf5)
new_libraries="$new_libraries ${libdir}/libhdf5.a"
;;
-lhdf5_hl)
new_libraries="$new_libraries ${libdir}/libhdf5_hl.a"
;;
*)
new_libraries="$new_libraries $lib"
;;
esac
done
libraries="$new_libraries"
fi
for lib in $libraries; do
if echo $link_args | grep " $lib " > /dev/null ||
echo $link_args | grep " $lib$" > /dev/null; then
:
else
link_args="$link_args $lib "
fi
done
# The LIBS are just a bunch of -l* libraries necessary for the HDF5
# module. It's okay if they're included twice in the compile line.
link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS"
# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts to override
# them. User's LDFLAGS come just before clibpath, user's LIBS come after
# $link_objs and before the hdf5 libraries in $link_args, followed by any
# external library paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS
# or LIBS carried in from the hdf5 build.
$SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link
status=$?
fi
exit $status
|