/usr/share/pyshared/adios/skel_xml.py is in libadios-dev 1.5.0-1ubuntu7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 | #!/usr/bin/env python
from __future__ import absolute_import, division, print_function, unicode_literals
import argparse
import xml.dom.minidom
import skel_settings
def parse_command_line():
parser = argparse.ArgumentParser (description='Rewrite elements of the adios config file that would produce invalid syntax in the generated code, e.g. gwrite attributes containing + or %')
parser.add_argument ('project', metavar='project', help='Name of the skel project')
return parser.parse_args()
def cleanse (str):
# Trim the name at the first open paren to deal with gts issue
str = str.split('(')[0]
# replace unfriendly characters with safer versions
str = str.replace ("+", "__plus__")
str = str.replace ("%", "__pct__")
str = str.replace ("/", "__div__")
str = str.replace ("-", "__minus__")
str = str.replace ("**", "__pow__")
str = str.replace ("*", "__mul__")
return str
def create_skel_xml (project):
outfilename = project + '_skel.xml'
skel_file = open (outfilename, 'w')
doc = xml.dom.minidom.parse (project + '.xml')
#remove diagnostic groups (xgc1)
groups = doc.getElementsByTagName ('adios-group')
for g in groups:
if g.getAttribute('name').startswith ('diag'):
# remove this group
doc.getElementsByTagName ('adios-config')[0].removeChild(g)
methods = doc.getElementsByTagName ('method')
for m in methods:
if m.getAttribute ('group').startswith ('diag'):
# remove this method
doc.getElementsByTagName ('adios-config')[0].removeChild(m)
for m in methods:
token = doc.createTextNode ('***skel-parameters***')
m.appendChild (token)
#deal with the language
lang = doc.getElementsByTagName ('adios-config')[0].getAttribute ('host-language')
# #for now, assume the skeletal will be C
# if (lang == 'Fortran'):
# flip_dims = 'True'
# doc.getElementsByTagName ('adios-config')[0].setAttribute ('host-language', 'C')
# else:
# flip_dims = 'False'
#Do not change the language
flip_dims = 'False'
#clean up the variables
vars = doc.getElementsByTagName ('var')
for v in vars:
gwrite = v.getAttributeNode ('gwrite')
dims = v.getAttributeNode ('dimensions')
name = v.getAttributeNode ('name')
if gwrite != None:
gwrite.value = cleanse (gwrite.value)
if dims != None:
dims.value = cleanse (dims.value)
if flip_dims == 'True':
dims.value = ','.join(dims.value.split(',')[::-1] )
if name != None:
name.value = cleanse (name.value)
global_bounds = doc.getElementsByTagName ('global-bounds')
for gb in global_bounds:
dims = gb.getAttribute ('dimensions')
offsets = gb.getAttribute ('offsets')
if dims != None:
dims = cleanse (dims)
if flip_dims == 'True':
dims = ','.join (dims.split(',')[::-1] )
gb.setAttribute ('dimensions', dims)
if offsets != None:
offsets = cleanse (offsets)
if flip_dims == 'True':
offsets = ','.join (offsets.split(',')[::-1] )
gb.setAttribute ('offsets', offsets)
xmlstr = doc.toxml()
# ADIOS stumbles when there is no newline after the xml declaration, so we'll add one here
xmlstr = xmlstr.replace ("?>", "?>\n", 1)
skel_file.write (xmlstr)
def main ():
skel_settings.create_settings_dir_if_needed()
args = parse_command_line()
create_skel_xml (args.project)
if __name__ == "__main__":
main()
|