/usr/include/Bpp/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/SequenceWithQuality.h
|
text/x-c
|
root:root
|
0o644
|
26.2 KB
|
/usr/include/Bpp/Seq/SequenceExceptions.h
|
text/x-c
|
root:root
|
0o644
|
4.5 KB
|
/usr/include/Bpp/Seq/SequenceWithQualityTools.h
|
text/x-c
|
root:root
|
0o644
|
6.2 KB
|
/usr/include/Bpp/Seq/NucleicAcidsReplication.h
|
text/x-c
|
root:root
|
0o644
|
3.6 KB
|
/usr/include/Bpp/Seq/SequenceWithAnnotation.h
|
text/x-c
|
root:root
|
0o644
|
15.3 KB
|
/usr/include/Bpp/Seq/DNAToRNA.h
|
text/x-c
|
root:root
|
0o644
|
3.3 KB
|
/usr/include/Bpp/Seq/Site.h
|
text/x-c
|
root:root
|
0o644
|
5.7 KB
|
/usr/include/Bpp/Seq/Alphabet/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
2.5 KB
|
/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
10.3 KB
|
/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
|
text/x-c
|
root:root
|
0o644
|
4.4 KB
|
/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
|
text/x-c
|
root:root
|
0o644
|
7.3 KB
|
/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h
|
text/x-c
|
root:root
|
0o644
|
4.1 KB
|
/usr/include/Bpp/Seq/Alphabet/YeastMitochondrialCodonAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
2.4 KB
|
/usr/include/Bpp/Seq/Alphabet/AlphabetState.h
|
text/x-c
|
root:root
|
0o644
|
3.8 KB
|
/usr/include/Bpp/Seq/Alphabet/RNY.h
|
text/x-c++
|
root:root
|
0o644
|
3.9 KB
|
/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
|
text/x-c
|
root:root
|
0o644
|
3.7 KB
|
/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
|
text/x-c
|
root:root
|
0o644
|
4.3 KB
|
/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h
|
text/x-c++
|
root:root
|
0o644
|
8.1 KB
|
/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
|
text/x-c
|
root:root
|
0o644
|
2.6 KB
|
/usr/include/Bpp/Seq/Alphabet/EchinodermMitochondrialCodonAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
2.4 KB
|
/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h
|
text/x-c
|
root:root
|
0o644
|
6.1 KB
|
/usr/include/Bpp/Seq/Alphabet/RNA.h
|
text/x-c
|
root:root
|
0o644
|
2.8 KB
|
/usr/include/Bpp/Seq/Alphabet/DNA.h
|
text/x-c
|
root:root
|
0o644
|
2.8 KB
|
/usr/include/Bpp/Seq/Alphabet/InvertebrateMitochondrialCodonAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
2.5 KB
|
/usr/include/Bpp/Seq/Alphabet/StandardCodonAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
2.3 KB
|
/usr/include/Bpp/Seq/Alphabet/VertebrateMitochondrialCodonAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
2.4 KB
|
/usr/include/Bpp/Seq/Alphabet/Alphabet.h
|
text/x-c
|
root:root
|
0o644
|
14.6 KB
|
/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
|
text/x-c
|
root:root
|
0o644
|
8.0 KB
|
/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
|
text/x-c
|
root:root
|
0o644
|
2.7 KB
|
/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
|
text/x-c++
|
root:root
|
0o644
|
7.4 KB
|
/usr/include/Bpp/Seq/Transliterator.h
|
text/x-c
|
root:root
|
0o644
|
6.8 KB
|
/usr/include/Bpp/Seq/Sequence.h
|
text/x-c
|
root:root
|
0o644
|
14.6 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h
|
text/x-c++
|
root:root
|
0o644
|
4.2 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
|
text/x-c++
|
root:root
|
0o644
|
3.5 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
|
text/x-c++
|
root:root
|
0o644
|
3.6 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
|
text/x-c++
|
root:root
|
0o644
|
3.5 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
|
text/x-c++
|
root:root
|
0o644
|
3.6 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
|
text/x-c++
|
root:root
|
0o644
|
4.0 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
|
text/x-c++
|
root:root
|
0o644
|
3.6 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
|
text/x-c++
|
root:root
|
0o644
|
3.0 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
|
text/x-c++
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
|
text/x-c++
|
root:root
|
0o644
|
3.4 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
|
text/x-c++
|
root:root
|
0o644
|
5.4 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
|
text/x-c++
|
root:root
|
0o644
|
3.7 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
|
text/x-c++
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
|
text/x-c++
|
root:root
|
0o644
|
3.5 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
|
text/x-c++
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h
|
text/x-c++
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
|
text/x-c++
|
root:root
|
0o644
|
4.0 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
|
text/x-c++
|
root:root
|
0o644
|
3.6 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
|
text/x-c++
|
root:root
|
0o644
|
4.1 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
|
text/x-c++
|
root:root
|
0o644
|
3.6 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
|
text/x-c++
|
root:root
|
0o644
|
3.4 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
|
text/x-c++
|
root:root
|
0o644
|
3.7 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
|
text/x-c++
|
root:root
|
0o644
|
4.0 KB
|
/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
|
text/x-c++
|
root:root
|
0o644
|
5.0 KB
|
/usr/include/Bpp/Seq/SequenceWalker.h
|
text/x-c
|
root:root
|
0o644
|
2.9 KB
|
/usr/include/Bpp/Seq/SequenceTools.h
|
text/x-c++
|
root:root
|
0o644
|
14.3 KB
|
/usr/include/Bpp/Seq/CodonSiteTools.h
|
text/x-c
|
root:root
|
0o644
|
13.0 KB
|
/usr/include/Bpp/Seq/SiteTools.h
|
text/x-c++
|
root:root
|
0o644
|
8.5 KB
|
/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
|
text/x-c
|
root:root
|
0o644
|
6.9 KB
|
/usr/include/Bpp/Seq/SymbolListTools.h
|
text/x-c
|
root:root
|
0o644
|
8.2 KB
|
/usr/include/Bpp/Seq/GeneticCode/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
|
text/x-c
|
root:root
|
0o644
|
5.9 KB
|
/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
|
text/x-c
|
root:root
|
0o644
|
2.6 KB
|
/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
|
text/x-c
|
root:root
|
0o644
|
2.5 KB
|
/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
|
text/x-c
|
root:root
|
0o644
|
2.4 KB
|
/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
|
text/x-c
|
root:root
|
0o644
|
2.5 KB
|
/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
|
text/x-c
|
root:root
|
0o644
|
2.5 KB
|
/usr/include/Bpp/Seq/App/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/App/SequenceApplicationTools.h
|
text/x-c++
|
root:root
|
0o644
|
10.7 KB
|
/usr/include/Bpp/Seq/SequenceIterator.h
|
text/x-c
|
root:root
|
0o644
|
3.1 KB
|
/usr/include/Bpp/Seq/Container/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
|
text/x-c
|
root:root
|
0o644
|
2.9 KB
|
/usr/include/Bpp/Seq/Container/SiteContainerIterator.h
|
text/x-c
|
root:root
|
0o644
|
3.8 KB
|
/usr/include/Bpp/Seq/Container/VectorSiteContainer.h
|
text/x-c++
|
root:root
|
0o644
|
10.0 KB
|
/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h
|
text/x-c
|
root:root
|
0o644
|
7.3 KB
|
/usr/include/Bpp/Seq/Container/SiteContainer.h
|
text/x-c++
|
root:root
|
0o644
|
6.8 KB
|
/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
|
text/x-c
|
root:root
|
0o644
|
5.4 KB
|
/usr/include/Bpp/Seq/Container/MapSequenceContainer.h
|
text/x-c
|
root:root
|
0o644
|
8.5 KB
|
/usr/include/Bpp/Seq/Container/SiteContainerTools.h
|
text/x-c
|
root:root
|
0o644
|
21.6 KB
|
/usr/include/Bpp/Seq/Container/SequenceContainer.h
|
text/x-c
|
root:root
|
0o644
|
11.5 KB
|
/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
|
text/x-c
|
root:root
|
0o644
|
3.1 KB
|
/usr/include/Bpp/Seq/Container/SequenceContainerTools.h
|
text/x-c
|
root:root
|
0o644
|
12.4 KB
|
/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
|
text/x-c
|
root:root
|
0o644
|
4.3 KB
|
/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
|
text/x-c
|
root:root
|
0o644
|
9.8 KB
|
/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h
|
text/x-c
|
root:root
|
0o644
|
9.5 KB
|
/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
|
text/x-c++
|
root:root
|
0o644
|
12.6 KB
|
/usr/include/Bpp/Seq/SiteExceptions.h
|
text/x-c
|
root:root
|
0o644
|
3.3 KB
|
/usr/include/Bpp/Seq/SymbolList.h
|
text/x-c
|
root:root
|
0o644
|
22.6 KB
|
/usr/include/Bpp/Seq/SequencePositionIterators.h
|
text/x-c
|
root:root
|
0o644
|
6.6 KB
|
/usr/include/Bpp/Seq/DistanceMatrix.h
|
text/x-c
|
root:root
|
0o644
|
6.7 KB
|
/usr/include/Bpp/Seq/SiteIterator.h
|
text/x-c
|
root:root
|
0o644
|
2.3 KB
|
/usr/include/Bpp/Seq/Io/
|
|
root:root
|
0o755
|
|
/usr/include/Bpp/Seq/Io/Phylip.h
|
text/x-c
|
root:root
|
0o644
|
6.7 KB
|
/usr/include/Bpp/Seq/Io/ISequence.h
|
text/x-c
|
root:root
|
0o644
|
4.2 KB
|
/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
|
text/x-c
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/Io/AbstractOAlignment.h
|
text/x-c
|
root:root
|
0o644
|
2.6 KB
|
/usr/include/Bpp/Seq/Io/SequenceFileIndex.h
|
text/x-c
|
root:root
|
0o644
|
2.6 KB
|
/usr/include/Bpp/Seq/Io/IoSequence.h
|
text/x-c
|
root:root
|
0o644
|
2.1 KB
|
/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h
|
text/x-c
|
root:root
|
0o644
|
3.9 KB
|
/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
|
text/x-c
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/Io/Stockholm.h
|
text/x-c
|
root:root
|
0o644
|
3.7 KB
|
/usr/include/Bpp/Seq/Io/PhredPoly.h
|
text/x-c
|
root:root
|
0o644
|
2.9 KB
|
/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h
|
text/x-c
|
root:root
|
0o644
|
3.3 KB
|
/usr/include/Bpp/Seq/Io/OSequenceStream.h
|
text/x-c
|
root:root
|
0o644
|
2.4 KB
|
/usr/include/Bpp/Seq/Io/IoSequenceStream.h
|
text/x-c
|
root:root
|
0o644
|
2.0 KB
|
/usr/include/Bpp/Seq/Io/AbstractISequence.h
|
text/x-c
|
root:root
|
0o644
|
5.5 KB
|
/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h
|
text/x-c
|
root:root
|
0o644
|
3.9 KB
|
/usr/include/Bpp/Seq/Io/AbstractOSequence.h
|
text/x-c
|
root:root
|
0o644
|
3.4 KB
|
/usr/include/Bpp/Seq/Io/Mase.h
|
text/x-c
|
root:root
|
0o644
|
8.4 KB
|
/usr/include/Bpp/Seq/Io/PhredPhd.h
|
text/x-c
|
root:root
|
0o644
|
4.8 KB
|
/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h
|
text/x-c
|
root:root
|
0o644
|
3.3 KB
|
/usr/include/Bpp/Seq/Io/MaseTools.h
|
text/x-c
|
root:root
|
0o644
|
5.8 KB
|
/usr/include/Bpp/Seq/Io/NexusTools.h
|
text/x-c
|
root:root
|
0o644
|
2.9 KB
|
/usr/include/Bpp/Seq/Io/IoSequenceFactory.h
|
text/x-c
|
root:root
|
0o644
|
4.3 KB
|
/usr/include/Bpp/Seq/Io/NexusIoSequence.h
|
text/x-c
|
root:root
|
0o644
|
4.7 KB
|
/usr/include/Bpp/Seq/Io/Dcse.h
|
text/x-c
|
root:root
|
0o644
|
3.2 KB
|
/usr/include/Bpp/Seq/Io/AbstractIAlignment.h
|
text/x-c
|
root:root
|
0o644
|
5.6 KB
|
/usr/include/Bpp/Seq/Io/Fasta.h
|
text/x-c
|
root:root
|
0o644
|
6.9 KB
|
/usr/include/Bpp/Seq/Io/OSequence.h
|
text/x-c
|
root:root
|
0o644
|
4.3 KB
|
/usr/include/Bpp/Seq/Io/GenBank.h
|
text/x-c
|
root:root
|
0o644
|
2.7 KB
|
/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
|
text/x-c
|
root:root
|
0o644
|
3.3 KB
|
/usr/include/Bpp/Seq/Io/Clustal.h
|
text/x-c++
|
root:root
|
0o644
|
4.7 KB
|
/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
|
text/x-c
|
root:root
|
0o644
|
4.1 KB
|
/usr/include/Bpp/Seq/Io/ISequenceStream.h
|
text/x-c
|
root:root
|
0o644
|
2.5 KB
|
/usr/include/Bpp/Seq/StringSequenceTools.h
|
text/x-c
|
root:root
|
0o644
|
7.5 KB
|