/usr/include/clustalo/clustal/ktuple_pair.h is in libclustalo-dev 1.2.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 | /*********************************************************************
* Clustal Omega - Multiple sequence alignment
*
* Copyright (C) 2010 University College Dublin
*
* Clustal-Omega is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License as
* published by the Free Software Foundation; either version 2 of the
* License, or (at your option) any later version.
*
* This file is part of Clustal-Omega.
*
********************************************************************/
/*
* RCS $Id: ktuple_pair.h 193 2011-02-07 15:45:21Z andreas $
*/
/* K-Tuple code for pairwise alignment (Wilbur and Lipman (1983)
* Most code taken from showpair (Clustal 1.83)
*/
#ifndef CLUSTALO_KTUPLE_PAIR_H
#define CLUSTALO_KTUPLE_PAIR_H
#include "seq.h"
#include "symmatrix.h"
#include "progress.h"
typedef struct {
int ktup;
int window;
int wind_gap;
int signif;
} ktuple_param_t;
extern void
KTuplePairDist(symmatrix_t *tmat, mseq_t *mseq,
int istart, int iend,
int jstart, int jend,
ktuple_param_t *aln_param,
progress_t *prProgress,
unsigned long int *ulStepNo, unsigned long int ulTotalStepNo);
#endif
|