/usr/include/clustalo/hhalign/hhfunc.h is in libclustalo-dev 1.2.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | /*********************************************************************
* Clustal Omega - Multiple sequence alignment
*
* Copyright (C) 2010 University College Dublin
*
* Clustal-Omega is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License as
* published by the Free Software Foundation; either version 2 of the
* License, or (at your option) any later version.
*
* This file is part of Clustal-Omega.
*
********************************************************************/
/*
* RCS $Id: hhfunc.h 290 2013-09-20 15:18:12Z fabian $
*/
int readHMMWrapper(hmm_light *rHMM_p,
char *pcHMM_input);
void FreeHMMstruct(hmm_light *prHMM);
int AlnToHMM2(hmm_light *rHMM_p, hhalign_para rHhalignPara,
char **ppcSeq, int iN);
int HHMake_Wrapper(char *tmp_aln, char *hmm_out);
|