This file is indexed.

/usr/include/speech_tools/EST_DMatrix.h is in libestools2.1-dev 1:2.1~release-6.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
/*************************************************************************/
/*                                                                       */
/*                Centre for Speech Technology Research                  */
/*                     University of Edinburgh, UK                       */
/*                         Copyright (c) 1996                            */
/*                        All Rights Reserved.                           */
/*                                                                       */
/*  Permission is hereby granted, free of charge, to use and distribute  */
/*  this software and its documentation without restriction, including   */
/*  without limitation the rights to use, copy, modify, merge, publish,  */
/*  distribute, sublicense, and/or sell copies of this work, and to      */
/*  permit persons to whom this work is furnished to do so, subject to   */
/*  the following conditions:                                            */
/*   1. The code must retain the above copyright notice, this list of    */
/*      conditions and the following disclaimer.                         */
/*   2. Any modifications must be clearly marked as such.                */
/*   3. Original authors' names are not deleted.                         */
/*   4. The authors' names are not used to endorse or promote products   */
/*      derived from this software without specific prior written        */
/*      permission.                                                      */
/*                                                                       */
/*  THE UNIVERSITY OF EDINBURGH AND THE CONTRIBUTORS TO THIS WORK        */
/*  DISCLAIM ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING      */
/*  ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT   */
/*  SHALL THE UNIVERSITY OF EDINBURGH NOR THE CONTRIBUTORS BE LIABLE     */
/*  FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES    */
/*  WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN   */
/*  AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION,          */
/*  ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF       */
/*  THIS SOFTWARE.                                                       */
/*                                                                       */
/*************************************************************************/
/*                                                                       */
/*                     Author :  Simon King                              */
/*                     Date   :  February 1999                           */
/* --------------------------------------------------------------------- */
/*          Double matrix class - copied from FMatrix !                  */
/*                                                                       */
/*************************************************************************/

#ifndef __DMatrix_H__
#define __DMatrix_H__

#include "EST_TSimpleMatrix.h"
#include "EST_TSimpleVector.h"
#include "EST_FMatrix.h"


class EST_DVector;

/** A matrix class for double precision floating point numbers. 
EST_DMatrix x should be used instead of double **x wherever
possible.*/
class EST_DMatrix : public EST_TSimpleMatrix<double> {
private:
public:
    /// size constructor
    EST_DMatrix(int m, int n):EST_TSimpleMatrix<double>(m, n)  {}
    /// copy constructor
    EST_DMatrix(const EST_DMatrix &a):EST_TSimpleMatrix<double>(a)  {}

    static EST_String default_file_type;
    /// CHECK  - what does this do???
    EST_DMatrix(const EST_DMatrix &a, int b);
    /// default constructor
    EST_DMatrix():EST_TSimpleMatrix<double>()  {}

    /// Save in file (ascii or binary)
    EST_write_status save(const EST_String &filename,
			  const EST_String &type = 
			        EST_DMatrix::default_file_type);
    /// Load from file (ascii or binary as defined in file)
    EST_read_status load(const EST_String &filename);
    /// Save in file in est format
    EST_write_status est_save(const EST_String &filename,
			      const EST_String &type);
    /// Load from file in est format (binary/ascii defined in file itself)
    EST_read_status est_load(const EST_String &filename);

    /// Copy 2-d array {\tt x} of size {\tt rows x cols} into matrix.
    void copyin(double **x, int rows, int cols);

    /// Add elements of 2 same sized matrices.
    EST_DMatrix &operator+=(const EST_DMatrix &a);

    /// Subtract elements of 2 same sized matrices.
    EST_DMatrix &operator-=(const EST_DMatrix &a);

    /// elementwise multiply by scalar
    EST_DMatrix &operator*=(const double f); 

    /// elementwise divide by scalar
    EST_DMatrix &operator/=(const double f); 

    /// Multiply all elements of matrix by {\tt x}.
    friend EST_DMatrix operator*(const EST_DMatrix &a, const double x);

    /// Multiply matrix by vector.
    friend EST_DVector operator*(const EST_DMatrix &a, const EST_DVector &v);

    /// Multiply vector by matrix
    friend EST_DVector operator*(const EST_DVector &v,const EST_DMatrix &a);

    /// Multiply matrix by matrix.
    friend EST_DMatrix operator*(const EST_DMatrix &a, const EST_DMatrix &b);
};


/** A vector class for double precision floating point
    numbers. {\tt EST_DVector x} should be used instead of 
    {\tt float *x} wherever possible.
*/
class EST_DVector: public EST_TSimpleVector<double> {
public:
    /// Size constructor.
    EST_DVector(int n): EST_TSimpleVector<double>(n) {}
    /// Copy constructor.
    EST_DVector(const EST_DVector &a): EST_TSimpleVector<double>(a) {}
    /// Default constructor.
    EST_DVector(): EST_TSimpleVector<double>() {}

    /// elementwise multiply
    EST_DVector &operator*=(const EST_DVector &s); 

    /// elementwise add
    EST_DVector &operator+=(const EST_DVector &s); 

    /// elementwise multiply by scalar
    EST_DVector &operator*=(const double d); 

    /// elementwise divide by scalar
    EST_DVector &operator/=(const double d); 

    EST_write_status est_save(const EST_String &filename,
			      const EST_String &type);

    /// save vector to file <tt> filename</tt>.
    EST_write_status save(const EST_String &filename,
			  const EST_String &type);

    /// load vector from file <tt> filename</tt>.
    EST_read_status load(const EST_String &filename);
    /// Load from file in est format (binary/ascii defined in file itself)
    EST_read_status est_load(const EST_String &filename);
};

int square(const EST_DMatrix &a);
/// inverse
int inverse(const EST_DMatrix &a, EST_DMatrix &inv);
int inverse(const EST_DMatrix &a, EST_DMatrix &inv, int &singularity);
/// pseudo inverse (for non-square matrices)
int pseudo_inverse(const EST_DMatrix &a, EST_DMatrix &inv); 
int pseudo_inverse(const EST_DMatrix &a, EST_DMatrix &inv,int &singularity); 

/// some useful matrix creators
/// make an identity matrix of dimension n
void eye(EST_DMatrix &a, const int n);
/// make already square matrix into I without resizing
void eye(EST_DMatrix &a);

/// the user should use est_seed to seed the random number generator
void est_seed();
void est_seed48();
/// all elements are randomised
void make_random_vector(EST_DVector &M, const double scale);
/// all elements are randomised
void make_random_matrix(EST_DMatrix &M, const double scale);
/// used for variance
void make_random_diagonal_matrix(EST_DMatrix &M, const double scale);
/// used for covariance
void make_random_symmetric_matrix(EST_DMatrix &M, const double scale);

void make_poly_basis_function(EST_DMatrix &T, EST_DVector t);

/// elementwise add
EST_DVector add(const EST_DVector &a,const EST_DVector &b);
/// elementwise subtract
EST_DVector subtract(const EST_DVector &a,const EST_DVector &b);

/// enforce symmetry
void symmetrize(EST_DMatrix &a);
/// stack columns on top of each other to make a vector
void stack_matrix(const EST_DMatrix &M, EST_DVector &v);
/// inplace diagonalise
void inplace_diagonalise(EST_DMatrix &a);


double determinant(const EST_DMatrix &a);
/// not implemented ??
int singular(EST_DMatrix &a);
/// exchange rows and columns
void transpose(const EST_DMatrix &a,EST_DMatrix &b);
EST_DMatrix triangulate(const EST_DMatrix &a);

/// extract leading diagonal as a matrix
EST_DMatrix diagonalise(const EST_DMatrix &a);
/// extract leading diagonal as a vector
EST_DVector diagonal(const EST_DMatrix &a);
/// sum of elements
double sum(const EST_DMatrix &a);
void multiply(const EST_DMatrix &a, const EST_DMatrix &b, EST_DMatrix &c);
int  floor_matrix(EST_DMatrix &M, const double floor);

/// matrix product of two vectors (#rows = length of first vector, #cols = length of second vector)
EST_DMatrix cov_prod(const EST_DVector &v1,const EST_DVector &v2);

EST_DMatrix operator*(const EST_DMatrix &a, const EST_DMatrix &b);
EST_DMatrix operator-(const EST_DMatrix &a, const EST_DMatrix &b);
EST_DMatrix operator+(const EST_DMatrix &a, const EST_DMatrix &b);

EST_DVector operator-(const EST_DVector &a, const EST_DVector &b);
EST_DVector operator+(const EST_DVector &a, const EST_DVector &b);

EST_DMatrix sub(const EST_DMatrix &a, int row, int col);
EST_DMatrix DMatrix_abs(const EST_DMatrix &a);

EST_DMatrix row(const EST_DMatrix &a, int row);
EST_DMatrix column(const EST_DMatrix &a, int col);


/// least squares fit
bool
polynomial_fit(EST_DVector &x, EST_DVector &y, EST_DVector &co_effs, int order);

/// weighted least squares fit
bool
polynomial_fit(EST_DVector &x, EST_DVector &y, EST_DVector &co_effs, 
	       EST_DVector &weights, int order);

double
polynomial_value(const EST_DVector &coeffs, const double x);

/// vector dot product
double operator*(const EST_DVector &v1, const EST_DVector &v2);


#endif