/usr/include/gifti/gifti_io.h is in libgiftiio-dev 1.0.9-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 | #ifndef GIFTI_IO_H
#define GIFTI_IO_H
#include <zlib.h>
#include <expat.h>
#include <nifti1_io.h>
/* also #include "gifti_xml.h", but at the end */
/* ---------------------------------------------------------------------- */
/* These must be 0-based and sequential.
- 0 matches _UNDEF
- highest maches _MAX
- list matches corresponding gifti_*_list
*/
#define GIFTI_IND_ORD_UNDEF 0
#define GIFTI_IND_ORD_ROW_MAJOR 1
#define GIFTI_IND_ORD_COL_MAJOR 2
#define GIFTI_IND_ORD_MAX 2
#define GIFTI_DATALOC_UNDEF 0
#define GIFTI_DATALOC_INT 1
#define GIFTI_DATALOC_EXT 2
#define GIFTI_DATALOC_MAX 2
#define GIFTI_ENCODING_UNDEF 0
#define GIFTI_ENCODING_ASCII 1 /* human readable ASCII data */
#define GIFTI_ENCODING_B64BIN 2 /* base64 encoded binary data */
#define GIFTI_ENCODING_B64GZ 3 /* base64 compressed binary */
#define GIFTI_ENCODING_EXTBIN 4 /* external unencoded binary */
#define GIFTI_ENCODING_MAX 4
#define GIFTI_ENDIAN_UNDEF 0
#define GIFTI_ENDIAN_BIG 1
#define GIFTI_ENDIAN_LITTLE 2
#define GIFTI_ENDIAN_MAX 2
#define GIFTI_B64_CHECK_UNDEF 0
#define GIFTI_B64_CHECK_NONE 1 /* no checking */
#define GIFTI_B64_CHECK_DETECT 2 /* simply detect errors */
#define GIFTI_B64_CHECK_COUNT 3 /* count the number of errors */
#define GIFTI_B64_CHECK_SKIP 4 /* skip any bad chars, no count */
#define GIFTI_B64_CHECK_SKIPNCOUNT 5 /* skip and count bad characters */
#define GIFTI_B64_CHECK_MAX 5
#define GIFTI_DARRAY_DIM_LEN 6 /* length of dims[] array */
/* use our own #def, in case we don't have zlib */
#undef GZ_DEFAULT_COMPRESSION
#ifdef HAVE_ZLIB
#define GZ_DEFAULT_COMPRESSION Z_DEFAULT_COMPRESSION
#define GIFTI_COMP_WITH_ZLIB 1 /* to show at run-time */
#else
#define GZ_DEFAULT_COMPRESSION -1
#define GIFTI_COMP_WITH_ZLIB 0
#endif
/* global declarations of matching lists */
extern char * gifti_index_order_list[];
extern char * gifti_dataloc_list[];
extern char * gifti_encoding_list[] ;
extern char * gifti_endian_list[];
/* ---------------------------------------------------------------------- */
/* notes:
- all data should be owned by the struct, i.e. strings should be
allocated copies, never assigned as a pointer used elsewhere
*/
typedef struct {
int length;
char ** name;
char ** value;
} nvpairs;
typedef nvpairs giiMetaData;
typedef struct {
int length; /* length of each array, if allocated */
int * key; /* changed from index 7 Mar 2010 */
char ** label;
float * rgba; /* (optional) RGBA tuples (4*length, in [0,1.0]) */
} giiLabelTable;
typedef struct {
char * dataspace;
char * xformspace;
double xform[4][4]; /* ******** no type specified ********** */
} giiCoordSystem;
typedef struct {
/* attributes */
int intent; /* NIFTI_INTENT code, describing data */
int datatype; /* numerical type of Data values */
int ind_ord; /* lowest Dim to highest, or reverse */
int num_dim; /* level of DimX applied */
int dims[6]; /* dimension lengths (first num_dim set) */
int encoding; /* format of Data on disk */
int endian; /* endian, if binary Encoding */
char * ext_fname; /* external filename, in cur directory */
long long ext_offset; /* offset of data within external file */
/* elements */
giiMetaData meta;
giiCoordSystem ** coordsys; /* array of pointers to giiCoordSystem */
void * data; /* unencoded, uncompressed, swapped */
/* extras */
long long nvals; /* number of values (product of Dims) */
int nbyper; /* number of bytes per value */
int numCS; /* number of giiCoordSystem structs */
nvpairs ex_atrs; /* extra attributes */
} giiDataArray;
typedef struct {
/* attributes */
int numDA; /* number of DataArrays */
char * version; /* GIFTI version string */
/* elements */
giiMetaData meta;
giiLabelTable labeltable;
giiDataArray ** darray;
/* extras */
int swapped; /* were the bytes swapped */
int compressed; /* was the data compressed */
nvpairs ex_atrs; /* extra attributes */
} gifti_image;
typedef struct {
int verb;
} gifti_globals;
typedef struct {
int type; /* should match NIFTI_TYPE_* */
int nbyper; /* bytes per value */
int swapsize; /* bytes per swap piece */
char * name; /* text string match type */
} gifti_type_ele;
/* prototypes */
/* main interface protos */
gifti_image * gifti_read_image (const char * fname, int read_data );
gifti_image * gifti_read_da_list(const char * fname, int read_data,
const int * dalist, int len );
int gifti_free_image (gifti_image * gim);
int gifti_valid_gifti_image (gifti_image * gim, int whine);
int gifti_write_image (gifti_image *gim, const char *fname,
int write_data);
gifti_image * gifti_create_image(int numDA, int intent, int dtype, int ndim,
const int * dims, int alloc_data);
/* end main interface protos */
int gifti_get_b64_check (void);
int gifti_set_b64_check (int level);
int gifti_get_indent (void);
int gifti_set_indent (int level);
int gifti_get_verb (void);
int gifti_set_verb (int level);
int gifti_get_update_ok (void);
int gifti_set_update_ok (int level);
int gifti_get_zlevel (void);
int gifti_set_zlevel (int level);
/* data copy routines */
int gifti_convert_to_float(gifti_image * gim);
char ** gifti_copy_char_list (char ** list, int len);
int gifti_copy_all_DA_meta(giiDataArray *dest, giiDataArray *src);
int gifti_copy_DA_meta (giiDataArray *dest, giiDataArray *src,
const char *name);
int gifti_copy_DA_meta_many(gifti_image * dest, gifti_image * src,
const char * name, const int * dalist, int len);
int gifti_copy_gifti_meta (gifti_image * dest, gifti_image * src,
const char * name);
int gifti_copy_LabelTable (giiLabelTable * dest, const giiLabelTable * src);
int gifti_copy_nvpairs (nvpairs *dest, const nvpairs *src);
char * gifti_strdup (const char * src);
gifti_image * gifti_copy_gifti_image(const gifti_image *gold, int copy_data);
giiCoordSystem * gifti_copy_CoordSystem(const giiCoordSystem *src);
giiDataArray * gifti_copy_DataArray (const giiDataArray *orig, int get_data);
long long gifti_darray_nvals (const giiDataArray * da);
long long gifti_gim_DA_size (const gifti_image * p, int in_mb);
int gifti_check_swap (void *data, int endian, long long nsets,
int swapsize);
int gifti_datatype_sizes (int datatype, int *nbyper, int *swapsize);
char * gifti_datatype2str (int type);
char * gifti_get_meta_value (const nvpairs * nvp, const char * name);
int gifti_get_this_endian (void);
int gifti_image_has_data (const gifti_image * gim);
int gifti_intent_from_string (const char * name);
int gifti_intent_is_valid (int code);
char * gifti_intent_to_string (int code);
char * gifti_list_index2string (char * list[], int index);
int gifti_get_xml_buf_size (void);
int gifti_set_xml_buf_size (int buf_size);
int gifti_str2attr_gifti (gifti_image * gim, const char * attr,
const char * val);
int gifti_str2attr_darray (giiDataArray * DA, const char * attr,
const char * value);
int gifti_str2ind_ord (const char * str);
int gifti_str2dataloc (const char * str);
int gifti_str2encoding (const char * str);
int gifti_str2endian (const char * str);
int gifti_str2datatype (const char * str);
int gifti_swap_2bytes (void *data, long long nsets);
int gifti_swap_4bytes (void *data, long long nsets);
int gifti_swap_Nbytes (void *data, long long nsets, int swapsize);
int gifti_alloc_DA_data (gifti_image * gim, const int *dalist, int len);
int gifti_add_empty_CS (giiDataArray * da);
int gifti_add_empty_darray (gifti_image * gim, int num_to_add);
int gifti_add_to_meta (giiMetaData * md, const char * name,
const char * value, int replace);
int gifti_add_to_nvpairs (nvpairs * p, const char * name,
const char * value);
int gifti_free_CoordSystem (giiCoordSystem * cs);
int gifti_free_CS_list (giiDataArray * da);
int gifti_free_DataArray_list(giiDataArray ** darray, int numDA);
int gifti_free_DataArray (giiDataArray * darray);
int gifti_free_LabelTable (giiLabelTable * t);
int gifti_free_nvpairs (nvpairs * p);
int gifti_read_dset_numDA (const char * fname);
int gifti_read_extern_DA_data(giiDataArray * da);
int gifti_set_atr_in_DAs (gifti_image *gim, const char *name,
const char *value, const int *dalist, int len);
int gifti_set_DA_atrs (giiDataArray * da, const char ** attr, int len,
int add_to_extras);
int gifti_set_DA_defaults (giiDataArray * da);
int gifti_set_DA_meta (gifti_image *gim, const char *name,
const char *value, const int * dalist,
int len, int replace);
int gifti_set_dims_all_DA (gifti_image * gim, int ndim, const int * dims);
int gifti_set_extern_filelist(gifti_image * gim, int nfiles, char ** files);
int gifti_update_nbyper (gifti_image * gim);
int gifti_valid_DataArray (const giiDataArray * da, int whine);
int gifti_valid_datatype (int dtype, int whine);
int gifti_valid_dims (const giiDataArray * da, int whine);
int gifti_valid_int_list (const int *list, int len, int min, int max,
int whine);
int gifti_valid_LabelTable (const giiLabelTable * T, int whine);
int gifti_valid_nbyper (int nbyper, int whine);
int gifti_valid_num_dim (int num_dim, int whine);
int gifti_valid_nvpairs (const nvpairs * nvp, int whine);
int gifti_write_extern_DA_data(giiDataArray * da);
/* comparison functions */
int gifti_approx_gifti_images (const gifti_image * g1, const gifti_image * g2,
int comp_data, int verb);
int gifti_compare_gifti_images (const gifti_image * g1, const gifti_image * g2,
int comp_data, int verb);
int gifti_approx_DA_pair (const giiDataArray*d1, const giiDataArray *d2,
int comp_data, int verb);
int gifti_approx_labeltables (const giiLabelTable*t1,const giiLabelTable *t2,
int verb);
int gifti_compare_coordsys (const giiCoordSystem * s1,
const giiCoordSystem * s2,int comp_data, int verb);
int gifti_compare_DA_data (const giiDataArray *d1, const giiDataArray *d2,
int verb);
int gifti_compare_DA_pair (const giiDataArray *d1, const giiDataArray *d2,
int comp_data, int verb);
int gifti_compare_gifti_data (const gifti_image * g1, const gifti_image * g2,
int verb);
int gifti_compare_gims_only (const gifti_image * g1, const gifti_image * g2,
int verb);
int gifti_compare_labeltable (const giiLabelTable*t1, const giiLabelTable*t2,
int verb);
int gifti_compare_nvpairs (const nvpairs *p1, const nvpairs *p2,int verb);
int gifti_strdiff (const char * s1, const char * s2);
long long gifti_approx_diff_offset(const void * p1, const void * p2,
long long length, int ni_type, double limit);
long long gifti_compare_raw_data(const void * p1, const void * p2,
long long length);
int gifti_triangle_diff_offset(const void *p1, const void *p2,
int ntri, int ni_type);
/* display functions */
void gifti_disp_dtd_url (void);
void gifti_disp_lib_hist (void);
void gifti_disp_lib_version (void);
int gifti_disp_nvpairs (const char *mesg, const nvpairs *p);
int gifti_disp_LabelTable (const char *mesg, const giiLabelTable *p);
int gifti_disp_CoordSystem (const char *mesg, const giiCoordSystem *p);
int gifti_disp_DataArray (const char *mesg, const giiDataArray *p,
int subs);
int gifti_disp_gifti_image (const char *mesg, const gifti_image *p,
int subs);
int gifti_disp_hex_data (const char *mesg, const void *data, int len,
FILE * fp);
int gifti_disp_raw_data (const void *data, int type, int nvals,
int newline, FILE * stream);
int gifti_clear_DataArray (giiDataArray * da);
int gifti_clear_float_zeros (char * str);
int gifti_clear_gifti_image (gifti_image * gim);
int gifti_clear_nvpairs (nvpairs * p);
int gifti_clear_LabelTable (giiLabelTable * p);
int gifti_clear_CoordSystem (giiCoordSystem * p);
giiDataArray * gifti_find_DA (gifti_image * gim, int intent, int index);
int gifti_find_DA_list (gifti_image * gim, int intent,
giiDataArray *** list,int *len);
int gifti_DA_rows_cols (giiDataArray * da, long long *rows,
long long *cols);
char * gifticlib_version (void);
#undef G_CHECK_NULL_STR
#define G_CHECK_NULL_STR(s) (s ? s : "NULL")
#include "gifti_xml.h" /* needs gifti_io.h, but users should not #include it */
#endif /* GIFTI_IO_H */
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