/usr/include/gofigure2/LSMToMegaCapture.h is in libgofigure-dev 0.9.0-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 | /*=========================================================================
Authors: The GoFigure Dev. Team.
at Megason Lab, Systems biology, Harvard Medical school, 2009-11
Copyright (c) 2009-11, President and Fellows of Harvard College.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
Neither the name of the President and Fellows of Harvard College
nor the names of its contributors may be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=========================================================================*/
#ifndef __LSMToMegaCapture_h
#define __LSMToMegaCapture_h
#if defined( WIN32 )
#pragma warning( disable: 4251 )
#endif
#include <vector>
#include <string>
#include "GoFigureGlobalDefinition.h"
#include "QGoIOConfigure.h"
class vtkLSMReader;
/**
\brief Convert 1 LSM (5D file) into megacapture files
*/
class QGOIO_EXPORT LSMToMegaCapture
{
public:
LSMToMegaCapture();
~LSMToMegaCapture();
/**
* \brief Set input lsm file. (Extract m_BaseName)
* \param iFileName
*/
void SetFileName(const std::string & iFileName);
/**
* \brief Set the output format: PNG (default) or TIFF
* \param iFileType
*/
void SetOutputFileType(const GoFigure::FileType & iFileType);
void Export(const std::string & iDirectoryPath);
void SetPlaque(const unsigned int & iPlaque);
void SetRow(const unsigned int & iRow);
void SetColumn(const unsigned int & iCol);
void SetXTile(const unsigned int & iXt);
void SetYTile(const unsigned int & iYt);
void SetZTile(const unsigned int & iZt);
std::vector< vtkLSMReader * > GetLSMReaders();
protected:
std::string m_FileName;
std::vector< vtkLSMReader * > m_LSMReaders;
unsigned int m_Plaque;
unsigned int m_Row;
unsigned int m_Column;
unsigned int m_XTile;
unsigned int m_YTile;
unsigned int m_ZTile;
double m_XOverlap;
double m_YOverlap;
double m_ZOverlap;
unsigned int m_NumberOfChannels;
unsigned int m_NumberOfTimePoints;
GoFigure::FileType m_FileType;
std::string m_BaseName;
};
#endif
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