libgofigure-dev 0.9.0-3 / usr / include / gofigure2 / itkCellPreprocess.h

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/*=========================================================================
 Authors: The GoFigure Dev. Team.
 at Megason Lab, Systems biology, Harvard Medical school, 2009

 Copyright (c) 2009, President and Fellows of Harvard College.
 All rights reserved.

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#ifndef __itkCellPreprocess_h
#define __itkCellPreprocess_h

#if defined( _MSC_VER )
#pragma warning ( disable : 4786 )
#endif

#ifdef __BORLANDC__
#define ITK_LEAN_AND_MEAN
#endif

#include "itkImageToImageFilter.h"
#include "itkCastImageFilter.h"
#include "itkMedianImageFilter.h"
#include "itkGrayscaleFillholeImageFilter.h"
#include "itkGradientAnisotropicDiffusionImageFilter.h"

namespace itk
{
template< class TInputImage, class TOutputImage = TInputImage >
class ITK_EXPORT CellPreprocess:
  public ImageToImageFilter< TInputImage, TOutputImage >
{
public:

  typedef CellPreprocess                                  Self;
  typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass;
  typedef SmartPointer< Self >                            Pointer;
  typedef SmartPointer< const Self >                      ConstPointer;

  itkStaticConstMacro (ImageDimension, unsigned int,
                       TInputImage::ImageDimension);

  /** Method for creation through object factory */
  itkNewMacro (Self);

  /** Run-time type information */
  itkTypeMacro (CellPreprocess, ImageToImageFilter);

  /** Display */
  void PrintSelf(std::ostream & os, Indent indent) const;

  typedef Image< float, ImageDimension >        ImageType;
  typedef typename ImageType::Pointer           ImagePointer;
  typedef typename ImageType::ConstPointer      ImageConstPointer;
  typedef typename ImageType::PixelType         ImagePixelType;
  typedef typename ImageType::RegionType        ImageRegionType;
  typedef typename ImageType::SizeType          ImageSizeType;
  typedef typename ImageSizeType::SizeValueType ImageSizeValueType;

  typedef typename ImageType::SpacingType ImageSpacingType;
  typedef typename ImageType::IndexType   ImageIndexType;
  typedef typename ImageType::PointType   ImagePointType;

  typedef CastImageFilter< TInputImage, ImageType > InputCastType;
  typedef typename InputCastType::Pointer           InputCastPointer;

  typedef MedianImageFilter< ImageType, ImageType > MedianFilterType;
  typedef typename MedianFilterType::Pointer        MedianFilterPointer;

  typedef GradientAnisotropicDiffusionImageFilter< ImageType,
                                                   ImageType > SmoothingFilterType;
  typedef typename SmoothingFilterType::Pointer
  SmoothingFilterPointer;

  typedef GrayscaleFillholeImageFilter< ImageType, ImageType > GrayscaleFillholeFilterType;
  typedef typename GrayscaleFillholeFilterType::Pointer        GrayscaleFillholePointer;

  typedef CastImageFilter< ImageType, TOutputImage > OutputCastType;
  typedef typename OutputCastType::Pointer           OutputCastPointer;

  itkGetConstMacro (LargestCellRadius, double);
  itkSetMacro (LargestCellRadius, double);
  itkGetConstMacro (MembraneData, bool);
  itkSetMacro (MembraneData, bool);
protected:

  CellPreprocess();
  ~CellPreprocess() {}

  void GenerateData();

  double m_LargestCellRadius;
  bool m_MembraneData;
private:

  CellPreprocess (Self &);        // intentionally not implemented
  void operator=(const Self &);   // intentionally not implemented
};
}   /* namespace itk */

#include "itkCellPreprocess.txx"
#endif