/usr/include/gofigure2/itkMegaCaptureImport.h is in libgofigure-dev 0.9.0-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 | /*=========================================================================
Authors: The GoFigure Dev. Team.
at Megason Lab, Systems biology, Harvard Medical school, 2009-11
Copyright (c) 2009-11, President and Fellows of Harvard College.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
Neither the name of the President and Fellows of Harvard College
nor the names of its contributors may be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=========================================================================*/
#ifndef __itkMegaCaptureImport_h
#define __itkMegaCaptureImport_h
#include <vector>
#include <algorithm>
#include <string.h>
#include "itkLightProcessObject.h"
#include <itksys/SystemTools.hxx>
#include "itkRegularExpressionSeriesFileNames.h"
#include "GoFigureFileInfoMultiIndexContainerHelper.h"
#include "QGoIOConfigure.h"
// #include <QProgressBar>
namespace itk
{
/**\class MegaCaptureImport
\brief
\bug If the filenames imported are of old megacapture format(v2)
and that the text of the beginning of the filename (before the values
to be stored in the database) contains more than 3 numerical groups,
the files are considered as new megacapture...*/
class QGOIO_EXPORT MegaCaptureImport:public LightProcessObject
{
public:
//typedef std::list<int> IntListType;
typedef std::vector< int > IntVectorType;
typedef std::pair< IntVectorType, IntVectorType > PairIntVectorType;
typedef std::vector< std::string > StringVectorType;
/** Standard class typedefs. */
typedef MegaCaptureImport Self;
typedef LightProcessObject Superclass;
typedef SmartPointer< Self > Pointer;
typedef SmartPointer< const Self > ConstPointer;
/** Run-time type information (and related methods). */
itkTypeMacro(MegaCaptureImport, LightProcessObject);
/** Method for creation through the object factory. */
itkNewMacro(Self);
void SetFileName(const std::string & iName);
void SetTimeBased(const bool & iBool);
void Glob();
void CreateOutput();
GoFigureFileInfoHelperMultiIndexContainer GetOutput();
void Update();
std::string GetHeaderFilename();
/** \brief return true if the filename is of new megacapture format,
false if it is the old one*/
static bool IsNewMegaCapture(const std::string & iFilename);
/** \brief return a modified cleaned filename */
static std::string CleanFileName(const std::string & iFilename);
/** \brief return the list of the Index and the list of the length of
all the numerical group present in the filename*/
static PairIntVectorType GetStartAndLengthOfNumericalGroupFilename(
const std::string & iFilename);
static bool AreTheseNumericalGroupNewMegaCapture(
PairIntVectorType StartAndLengthNumericalGroup);
protected:
MegaCaptureImport();
~MegaCaptureImport();
/** \brief Used for the database version1*/
void OldMegaCaptureFile(GoFigureFileInfoHelper & ioTempInfo,
const std::vector< unsigned int > & iNumericalValues);
/** \brief Used for the database version2*/
void NewMegaCaptureFile(GoFigureFileInfoHelper & ioTempInfo,
const std::vector< unsigned int > & iNumericalValues);
private:
MegaCaptureImport (const Self &); //purposely not implemented
void operator=(const Self &); //purposely not implemented
PairIntVectorType m_StartAndLengthNumGroup;
StringVectorType m_FileNameS;
GoFigureFileInfoHelperMultiIndexContainer m_OutputFileList;
std::string m_FileName;
std::string m_fileNameModified;
std::string m_HeaderFileName;
int m_NbSignificantMegaCaptureNumGroup;
};
}
#endif
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