/usr/include/gofigure2/itkViscousWatershedTransform.h is in libgofigure-dev 0.9.0-3.
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Authors: The GoFigure Dev. Team.
at Megason Lab, Systems biology, Harvard Medical school, 2009-11
Copyright (c) 2009-11, President and Fellows of Harvard College.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
Neither the name of the President and Fellows of Harvard College
nor the names of its contributors may be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=========================================================================*/
#ifndef __itkViscousWatershedTransform_h
#define __itkViscousWatershedTransform_h
#if defined( _MSC_VER )
#pragma warning ( disable : 4786 )
#endif
#ifdef __BORLANDC__
#define ITK_LEAN_AND_MEAN
#endif
#include "itkImageToImageFilter.h"
#include "itkBinaryThresholdImageFilter.h"
#include "itkBinaryBallStructuringElement.h"
#include "itkBinaryMorphologicalClosingImageFilter.h"
#include "itkImageRegionIterator.h"
namespace itk
{
template< class TFeatureImage, class TInputImage, class TSegmentImage >
class ViscousWatershedTransform:public ImageToImageFilter<
TFeatureImage, TFeatureImage >
{
public:
typedef ViscousWatershedTransform Self;
typedef ImageToImageFilter< TFeatureImage, TFeatureImage > Superclass;
typedef SmartPointer< Self > Pointer;
typedef SmartPointer< const Self > ConstPointer;
itkStaticConstMacro (ImageDimension, unsigned int,
TFeatureImage::ImageDimension);
/** Method for creation through object factory */
itkNewMacro (Self);
/** Run-time type information */
itkTypeMacro (ViscousWatershedTransform, ImageToImageFilter);
/** Display */
void PrintSelf(std::ostream & os, Indent indent) const;
typedef TFeatureImage FeatureImageType;
typedef typename FeatureImageType::Pointer FeatureImagePointer;
typedef typename FeatureImageType::ConstPointer FeatureImageConstPointer;
typedef typename FeatureImageType::PixelType FeatureImagePixelType;
typedef typename FeatureImageType::RegionType FeatureImageRegionType;
typedef typename FeatureImageType::SizeType FeatureImageSizeType;
typedef typename FeatureImageSizeType::SizeValueType FeatureImageSizeValueType;
typedef typename FeatureImageType::SpacingType FeatureImageSpacingType;
typedef typename FeatureImageType::IndexType FeatureImageIndexType;
typedef typename FeatureImageType::PointType FeatureImagePointType;
typedef TInputImage ImageType;
typedef typename ImageType::Pointer ImagePointer;
typedef typename ImageType::ConstPointer ImageConstPointer;
typedef typename ImageType::PixelType ImagePixelType;
typedef typename ImageType::RegionType ImageRegionType;
typedef typename ImageType::SizeType ImageSizeType;
typedef typename ImageSizeType::SizeValueType ImageSizeValueType;
typedef typename ImageType::SpacingType ImageSpacingType;
typedef typename ImageType::IndexType ImageIndexType;
typedef typename ImageType::PointType ImagePointType;
typedef TSegmentImage SegmentImageType;
typedef typename SegmentImageType::Pointer SegmentImagePointer;
typedef typename SegmentImageType::ConstPointer SegmentImageConstPointer;
typedef typename SegmentImageType::IndexType SegmentImageIndexType;
typedef typename SegmentImageType::PixelType SegmentImagePixelType;
typedef BinaryThresholdImageFilter< FeatureImageType, FeatureImageType >
ThresholdFilterType;
typedef typename ThresholdFilterType::Pointer ThresholdFilterPointer;
typedef BinaryBallStructuringElement< int,
ImageDimension > StructuringElementType;
typedef BinaryMorphologicalClosingImageFilter< FeatureImageType, FeatureImageType,
StructuringElementType > ClosingFilterType;
typedef typename ClosingFilterType::Pointer
ClosingFilterPointer;
typedef ImageRegionIterator< FeatureImageType >
FeatureIteratorType;
itkSetMacro (InitialLevel, unsigned int);
itkGetConstMacro (InitialLevel, unsigned int);
itkSetMacro (FinalLevel, unsigned int);
itkGetConstMacro (FinalLevel, unsigned int);
itkSetMacro (Increment, unsigned int);
itkGetConstMacro (Increment, unsigned int);
itkSetMacro (LargestRadius, unsigned int);
itkGetConstMacro (LargestRadius, unsigned int);
itkSetMacro (Slope, unsigned int);
itkGetConstMacro (Slope, unsigned int);
protected:
ViscousWatershedTransform();
~ViscousWatershedTransform() {}
void GenerateData();
unsigned int m_InitialLevel;
unsigned int m_FinalLevel;
unsigned int m_Increment;
unsigned int m_LargestRadius;
unsigned int m_Slope;
private:
ViscousWatershedTransform (Self &); // intentionally not implemented
void operator=(const Self &); // intentionally not implemented
};
} /* namespace itk */
#include "itkViscousWatershedTransform.txx"
#endif
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