This file is indexed.

/usr/include/hdf/atom.h is in libhdf4-dev 4.2r10-0ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF.  The full HDF copyright notice, including       *
 * terms governing use, modification, and redistribution, is contained in    *
 * the files COPYING and Copyright.html.  COPYING can be found at the root   *
 * of the source code distribution tree; Copyright.html can be found at      *
 * http://hdfgroup.org/products/hdf4/doc/Copyright.html.  If you do not have *
 * access to either file, you may request a copy from help@hdfgroup.org.     *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/* $Id: atom.h 5444 2010-08-25 16:40:05Z byrn $ */

/*-----------------------------------------------------------------------------
 * File:    atom.h
 * Purpose: header file for atom API
 * Dependencies: 
 * Invokes:
 * Contents:
 * Structure definitions: 
 * Constant definitions: 
 *---------------------------------------------------------------------------*/

/* avoid re-inclusion */
#ifndef __ATOM_H
#define __ATOM_H

#include "H4api_adpt.h"

/* Atom Features control */
/* Define the following macro for fast hash calculations (but limited hash sizes) */
#define HASH_SIZE_POWER_2

/* Define the following macro for atom caching over all the atoms */
#define ATOMS_ARE_CACHED

/* Define the following macro for "inline" atom lookups from the cache */
#ifdef ATOMS_ARE_CACHED     /* required for this to work */
#define ATOMS_CACHE_INLINE
#endif /* ATOMS_ARE_CACHED */

#ifdef ATOMS_CACHE_INLINE
/* Do swap using XOR operator. Ugly but fast... -QAK */
#define HAIswap_cache(i,j) \
                atom_id_cache[i]^=atom_id_cache[j], \
                atom_obj_cache[i]=(void *)((hdf_pint_t)atom_obj_cache[j]^(hdf_pint_t)atom_obj_cache[i]), \
                atom_id_cache[j]^=atom_id_cache[i], \
                atom_obj_cache[j]=(void *)((hdf_pint_t)atom_obj_cache[i]^(hdf_pint_t)atom_obj_cache[j]), \
                atom_id_cache[i]^=atom_id_cache[j], \
                atom_obj_cache[i]=(void *)((hdf_pint_t)atom_obj_cache[i]^(hdf_pint_t)atom_obj_cache[j])

/* Note! This is hardwired to the atom cache value being 4 */
#define HAatom_object(atm) \
    (atom_id_cache[0]==atm ? atom_obj_cache[0] : \
      atom_id_cache[1]==atm ? (HAIswap_cache(0,1),atom_obj_cache[0]) : \
       atom_id_cache[2]==atm ? (HAIswap_cache(1,2),atom_obj_cache[1]) : \
        atom_id_cache[3]==atm ? (HAIswap_cache(2,3),atom_obj_cache[2]) : \
         HAPatom_object(atm))
#endif /* ATOMS_CACHE_INLINE */

#include "hdf.h"

/* Group values allowed */
typedef enum {BADGROUP=(-1),    /* Invalid Group */
DDGROUP=0,                  /* Group ID for DD objects */
AIDGROUP=1,                 /* Group ID for access ID objects */
FIDGROUP=2,                 /* Group ID for file ID objects */
VGIDGROUP=3,                /* Group ID for Vgroup ID objects */
VSIDGROUP=4,                /* Group ID for Vdata ID objects */
GRIDGROUP=5,                /* Group ID for GR ID objects */
RIIDGROUP=6,                /* Group ID for RI ID objects */
BITIDGROUP=7,               /* Group ID for Bitfile ID objects */
ANIDGROUP=8,                /* Group ID for Annotation ID objects */
MAXGROUP                    /* Highest group in group_t (Invalid as true group) */
} group_t;

/* Type of atoms to return to users */
typedef int32 atom_t;

/* Type of the function to compare objects & keys */
typedef intn (*HAsearch_func_t)(const void * obj, const void * key);

#if defined ATOM_MASTER | defined ATOM_TESTER

/* # of bits to use for Group ID in each atom (change if MAXGROUP>16) */
#define GROUP_BITS  4
#define GROUP_MASK  0x0F

/* # of bits to use for the Atom index in each atom (change if MAXGROUP>16) */
#define ATOM_BITS   28
#define ATOM_MASK   0x0FFFFFFF

#ifdef ATOMS_ARE_CACHED
/* # of previous atoms cached, change inline caching macros (HAatom_object & HAIswap_cache) if this changes */
#define ATOM_CACHE_SIZE 4
#endif /* ATOMS_ARE_CACHED */

/* Map an atom to a Group number */
#define ATOM_TO_GROUP(a)    ((group_t)((((atom_t)(a))>>((sizeof(atom_t)*8)-GROUP_BITS))&GROUP_MASK))

#ifdef HASH_SIZE_POWER_2
/* Map an atom to a hash location (assumes s is a power of 2 and smaller than the ATOM_MASK constant) */
#define ATOM_TO_LOC(a,s)    ((atom_t)(a)&((s)-1))
#else /* HASH_SIZE_POWER_2 */
/* Map an atom to a hash location */
#define ATOM_TO_LOC(a,s)    (((atom_t)(a)&ATOM_MASK)%(s))
#endif /* HASH_SIZE_POWER_2 */

/* Combine a Group number and an atom index into an atom */
#define MAKE_ATOM(g,i)      ((((atom_t)(g)&GROUP_MASK)<<((sizeof(atom_t)*8)-GROUP_BITS))|((atom_t)(i)&ATOM_MASK))

/* Atom information structure used */
typedef struct atom_info_struct_tag {
    atom_t id;              /* atom ID for this info */
    VOIDP *obj_ptr;         /* pointer associated with the atom */
    struct atom_info_struct_tag *next;   /* link to next atom (in case of hash-clash) */
  }atom_info_t;

/* Atom group structure used */
typedef struct atom_group_struct_tag {
    uintn count;            /* # of times this group has been initialized */
    intn hash_size;         /* size of the hash table to store the atoms in */
    uintn atoms;            /* current number of atoms held */
    uintn nextid;           /* atom ID to use for the next atom */
    atom_info_t **atom_list;/* pointer to an array of ptrs to atoms */
  }atom_group_t;

/* Define this in only one place */
#ifdef ATOM_MASTER

/* Array of pointers to atomic groups */
static atom_group_t *atom_group_list[MAXGROUP]={NULL};

/* Pointer to the atom node free list */
static atom_info_t *atom_free_list=NULL;

#ifdef ATOMS_ARE_CACHED
/* Array of pointers to atomic groups */
#ifdef OLD_WAY
static atom_t atom_id_cache[ATOM_CACHE_SIZE]={-1,-1,-1,-1};
static VOIDP atom_obj_cache[ATOM_CACHE_SIZE]={NULL};
#else /* OLD_WAY */
HDFPUBLIC atom_t atom_id_cache[ATOM_CACHE_SIZE]={-1,-1,-1,-1};
HDFPUBLIC VOIDP atom_obj_cache[ATOM_CACHE_SIZE]={NULL};
#endif /* OLD_WAY */
#endif /* ATOMS_ARE_CACHED */
#endif /* ATOM_MASTER */

/* Useful routines for generally private use */

#endif /* ATOM_MASTER | ATOM_TESTER */

#ifndef ATOM_MASTER
HDFLIBAPI atom_t atom_id_cache[];
HDFLIBAPI VOIDP atom_obj_cache[];
#endif /* ATOM_MASTER */

#if defined c_plusplus || defined __cplusplus
extern      "C"
{
#endif                          /* c_plusplus || __cplusplus */

/******************************************************************************
 NAME
     HAinit_group - Initialize an atomic group

 DESCRIPTION
    Creates an atomic group to store atoms in.  If the group has already been
    initialized, this routine just increments the count of # of initializations
    and returns without trying to change the size of the hash table.

 RETURNS
    Returns SUCCEED if successful and FAIL otherwise

*******************************************************************************/
HDFLIBAPI intn HAinit_group(group_t grp,      /* IN: Group to initialize */
    intn hash_size                  /* IN: Minimum hash table size to use for group */
);

/******************************************************************************
 NAME
     HAdestroy_group - Destroy an atomic group

 DESCRIPTION
    Destroys an atomic group which atoms are stored in.  If the group still
    has atoms which are registered, this routine fails.  If there have been
    multiple initializations of the group, this routine just decrements the
    count of initializations and does not check the atoms out-standing.

 RETURNS
    Returns SUCCEED if successful and FAIL otherwise

*******************************************************************************/
HDFLIBAPI intn HAdestroy_group(group_t grp       /* IN: Group to destroy */
);

/******************************************************************************
 NAME
     HAregister_atom - Register an object in a group and get an atom for it.

 DESCRIPTION
    Registers an object in a group and returns an atom for it.  This routine
    does _not_ check for unique-ness of the objects, if you register an object
    twice, you will get two different atoms for it.  This routine does make
    certain that each atom in a group is unique.  Atoms are created by getting
    a unique number for the group the atom is in and incorporating the group
    into the atom which is returned to the user.

 RETURNS
    Returns atom if successful and FAIL otherwise

*******************************************************************************/
HDFLIBAPI atom_t HAregister_atom(group_t grp,     /* IN: Group to register the object in */
    VOIDP object                        /* IN: Object to attach to atom */
);

/******************************************************************************
 NAME
     HAatom_object - Returns to the object ptr for the atom 

 DESCRIPTION
    Retrieves the object ptr which is associated with the atom.

 RETURNS
    Returns object ptr if successful and NULL otherwise

*******************************************************************************/
#ifdef ATOMS_CACHE_INLINE
HDFLIBAPI VOIDP HAPatom_object(atom_t atm   /* IN: Atom to retrieve object for */
);
#else /* ATOMS_CACHE_INLINE */
HDFLIBAPI VOIDP HAatom_object(atom_t atm   /* IN: Atom to retrieve object for */
);
#endif /* ATOMS_CACHE_INLINE */

/******************************************************************************
 NAME
     HAatom_group - Returns to the group for the atom 

 DESCRIPTION
    Retrieves the group which is associated with the atom.

 RETURNS
    Returns group if successful and FAIL otherwise

*******************************************************************************/
HDFLIBAPI group_t HAatom_group(atom_t atm   /* IN: Atom to retrieve group for */
);

/******************************************************************************
 NAME
     HAremove_atom - Removes an atom from a group

 DESCRIPTION
    Removes an atom from a group.

 RETURNS
    Returns atom's object if successful and FAIL otherwise

*******************************************************************************/
HDFLIBAPI VOIDP HAremove_atom(atom_t atm   /* IN: Atom to remove */
);

/******************************************************************************
 NAME
     HAsearch_atom - Search for an object in a group and get it's pointer.

 DESCRIPTION
    Searchs for an object in a group and returns the pointer to it.
    This routine calls the function pointer passed in for each object in the
    group until it finds a match.  Currently there is no way to resume a
    search.

 RETURNS
    Returns pointer an atom's object if successful and NULL otherwise

*******************************************************************************/
HDFLIBAPI VOIDP HAsearch_atom(group_t grp,        /* IN: Group to search for the object in */
    HAsearch_func_t func,               /* IN: Ptr to the comparison function */
    const void * key                     /* IN: pointer to key to compare against */
);

/******************************************************************************
 NAME
     HAshutdown - Terminate various static buffers.

 DESCRIPTION
    Free various buffers allocated in the HA routines.

 RETURNS
    Returns SUCCEED/FAIL

*******************************************************************************/
HDFLIBAPI intn HAshutdown(void);

#if defined c_plusplus || defined __cplusplus
}
#endif                          /* c_plusplus || __cplusplus */

#endif /* __ATOM_H */