libinsighttoolkit4-dev 4.5.0-3 / usr / include / ITK-4.5 / itkAnnulusOperator.h

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkAnnulusOperator_h
#define __itkAnnulusOperator_h

#include "itkNeighborhoodOperator.h"
#include "itkVector.h"

namespace itk
{
/**
 * \class AnnulusOperator
 *
 * \brief A NeighborhoodOperator for performing a matched filtering with an
 * annulus (two concentric circles, spheres, hyperspheres, etc.)
 *
 * AnnulusOperator defines a non-directional NeighborhoodOperator
 * representing two concentric circles, spheres, hyperspheres, etc.
 * The inner radius and the thickness of the annulus can be specified.
 *
 * The values for the annulus can be specified in a variety of
 * manners:
 *
 * 1) The values for the interior of the annulus (interior of inner
 * circle), the values for annulus (the region between the inner and
 * outer circle), and the values for the exterior of the annulus can
 * be specified.  This mode is useful in correlation based matched
 * filter applications. For instance, defining a hollow (or even
 * filled) circle.
 *
 * 2) The values can defined automatically for normalized
 * correlation. The values in the kernel will be defined to have mean
 * zero and norm 1.  The area outside the annulus will have values
 * of zero. In this mode, you can also specify whether you want the
 * center of the annulus to be bright (intensity > 0) or dark
 * (intensity < 0).
 *
 * 1) Set the annulus parameters: InnerRadius and Thickness
 * 2) Set the intensities to use for interior, wall, and exterior
 * kernel positions for correlation based operations or call
 * NormalizeOn() to define kernel values automatically for use in
 * normalized correlation.
 * 3) If NormalizedOn(), indicate whether you want the center of the
 * annulus to be bright or dark.
 * 4) call \c CreateOperator()
 *
 * \sa NeighborhoodOperator
 * \sa Neighborhood
 *
 * \ingroup Operators
 * \ingroup ITKCommon
 */
template< typename TPixel, unsigned int TDimension = 2,
          typename TAllocator = NeighborhoodAllocator< TPixel > >
class AnnulusOperator:
  public NeighborhoodOperator< TPixel, TDimension, TAllocator >
{
public:
  /** Standard typedefs */
  typedef AnnulusOperator                                        Self;
  typedef NeighborhoodOperator< TPixel, TDimension, TAllocator > Superclass;

  /** Additional typedefs */
  typedef typename Superclass::SizeType      SizeType;
  typedef typename Superclass::OffsetType    OffsetType;
  typedef Vector< double, TDimension >       SpacingType;

  itkTypeMacro(AnnulusOperator, NeighborhoodOperator);

  AnnulusOperator():
    NeighborhoodOperator< TPixel, TDimension, TAllocator >(),
    m_InnerRadius(1.0),
    m_Thickness( 1.0 ),
    m_Normalize(false),
    m_BrightCenter(false),
    m_InteriorValue(NumericTraits< PixelType >::Zero),
    m_AnnulusValue(NumericTraits< PixelType >::One),
    m_ExteriorValue(NumericTraits< PixelType >::Zero),
    m_Spacing( 1.0 )
  {}

  AnnulusOperator(const Self & other):
    NeighborhoodOperator< TPixel, TDimension, TAllocator >(other),
    m_InnerRadius( other.m_InnerRadius ),
    m_Thickness( other.m_Thickness ),
    m_Normalize( other.m_Normalize ),
    m_BrightCenter( other.m_BrightCenter ),
    m_InteriorValue( other.m_InteriorValue ),
    m_AnnulusValue( other.m_AnnulusValue ),
    m_ExteriorValue( other.m_ExteriorValue ),
    m_Spacing( other.m_Spacing )
  {
  }

  /** This function is called to create the operator.  The radius of
   * the operator is determine automatically.  */
  void CreateOperator();

  /** Set/Get the inner radius of the annulus. Radius is specified in
   * physical units (mm). */
  void SetInnerRadius(double r)
  { m_InnerRadius = r; }
  double GetInnerRadius() const
  { return m_InnerRadius; }

  /** Set/Get the thickness of the annulus.  The outer radius of the
   * annulus is defined as r = InnerRadius + Thickness. Thickness is
   * specified in physical units (mm). */
  void SetThickness(double t)
  { m_Thickness = t; }
  double GetThickness() const
  { return m_Thickness; }

  /** Set/Get the pixel spacings.  Setting these ensures the annulus
   * is round in physical space. Defaults to 1. */
  void SetSpacing(SpacingType & s)
  { m_Spacing = s; }
  const SpacingType & GetSpacing() const
  { return m_Spacing; }

  /** Set/Get whether kernel values are computed automatically or
   * specified manually */
  void SetNormalize(bool b)
  { m_Normalize = b; }
  bool GetNormalize() const
  { return m_Normalize; }
  void NormalizeOn()
  { this->SetNormalize(true); }
  void NormalizeOff()
  { this->SetNormalize(false); }

  /** If Normalize is on, you define the annulus to have a bright
   * center or a dark center. */
  void SetBrightCenter(bool b)
  { m_BrightCenter = b; }
  bool GetBrightCenter() const
  { return m_BrightCenter; }
  void BrightCenterOn()
  { this->SetBrightCenter(true); }
  void BrightCenterOff()
  { this->SetBrightCenter(false); }

  /** If Normalize is off, the interior to annulus, the
   * annulus (region between the two circles), and the region exterior to the
   * annulus to be defined manually.  Defauls are 0, 1, 0
   * respectively. */
  void SetInteriorValue(TPixel v)
  { m_InteriorValue = v; }
  TPixel GetInteriorValue() const
  { return m_InteriorValue; }
  void SetAnnulusValue(TPixel v)
  { m_AnnulusValue = v; }
  TPixel GetAnnulusValue() const
  { return m_AnnulusValue; }
  void SetExteriorValue(TPixel v)
  { m_ExteriorValue = v; }
  TPixel GetExteriorValue() const
  { return m_ExteriorValue; }

  /** Assignment operator */
  Self & operator=(const Self & other)
  {
    if(this != &other)
      {
      Superclass::operator=(other);
      m_InnerRadius = other.m_InnerRadius;
      m_Thickness = other.m_Thickness;
      m_Spacing = other.m_Spacing;
      m_InteriorValue = other.m_InteriorValue;
      m_AnnulusValue = other.m_AnnulusValue;
      m_ExteriorValue = other.m_ExteriorValue;
      m_Normalize = other.m_Normalize;
      m_BrightCenter = other.m_BrightCenter;
      }
    return *this;
  }

  /** Prints some debugging information */
  virtual void PrintSelf(std::ostream & os, Indent i) const
  {
    os << i << "AnnulusOperator { this=" << this
       << ", m_InnerRadius = " << m_InnerRadius
       << ", m_Thickness = " << m_Thickness
       << ", m_Spacing = " << m_Spacing
       << ", m_Normalize = " << m_Normalize
       << ", m_BrightCenter = " << m_BrightCenter
       << ", m_InteriorValue = " << m_InteriorValue
       << ", m_ExteriorValue = " << m_ExteriorValue
       << "}" << std::endl;
    Superclass::PrintSelf( os, i.GetNextIndent() );
  }

protected:

  /** Typedef support for coefficient vector type.  Necessary to
   *  work around compiler bug on VC++. */
  typedef typename Superclass::CoefficientVector CoefficientVector;
  typedef typename Superclass::PixelType         PixelType;

  /** Calculates operator coefficients. */
  CoefficientVector GenerateCoefficients();

  /** Arranges coefficients spatially in the memory buffer. */
  void Fill(const CoefficientVector & c);

private:

  double      m_InnerRadius;
  double      m_Thickness;
  bool        m_Normalize;
  bool        m_BrightCenter;
  PixelType   m_InteriorValue;
  PixelType   m_AnnulusValue;
  PixelType   m_ExteriorValue;
  SpacingType m_Spacing;
};
} // namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkAnnulusOperator.hxx"
#endif
#endif