This file is indexed.

/usr/include/ITK-4.5/itkBSplineTransformParametersAdaptor.h is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkBSplineTransformParametersAdaptor_h
#define __itkBSplineTransformParametersAdaptor_h

#include "itkTransformParametersAdaptor.h"

namespace itk
{
/** \class BSplineTransformParametersAdaptor
 * \brief BSplineTransformParametersAdaptor adapts a BSplineTransform to the
 * new specified fixed parameters.
 *
 * The fixed parameters of the BSplineTransform store the following information
 * (in order as they appear in m_FixedParameters):
 *    grid size
 *    grid origin
 *    grid spacing
 *    grid direction
 *
 * During multiresolution image registration it is often desired to also increase
 * the B-spline grid resolution for greater flexibility in optimizing the
 * transform.  As defined in the base class, the user can change the resolution via
 *
 *   \code
 *   transformAdaptor->SetTransform( transform );
 *   transformAdaptor->SetRequiredFixedParameters( fixedParameters );
 *   transformAdaptor->AdaptTransformParameters();
 *   \endcode
 *
 * or the user can use the more intuitive API for setting the fixed parameters.
 * E.g., often the user will want to maintain the same transform domain spatial
 * extent but only increase the mesh size.  This can be done as follows:
 *
 *   \code
 *   transformAdaptor->SetTransform( transform );
 *   transformAdaptor->SetRequiredTransformDomainOrigin( transform->GetTransformDomainOrigin() );
 *   transformAdaptor->SetRequiredTransformDomainDirection( transform->GetTransformDomainDirection() );
 *   transformAdaptor->SetRequiredTransformDomainPhysicalDimensions( transform->GetTransformDomainPhysicalDimensions() );
 *   transformAdaptor->SetRequiredTransformDomainMeshSize( newMeshSize );
 *   transformAdaptor->AdaptTransformParameters();
 *   \endcode
 *
 * \author Nick Tustison
 * \author Marius Staring
 *
 * \ingroup ITKRegistrationCommon
 */
template<typename TTransform>
class BSplineTransformParametersAdaptor
: public TransformParametersAdaptor<TTransform>
{
public:

  /** Standard class typedefs. */
  typedef BSplineTransformParametersAdaptor          Self;
  typedef TransformParametersAdaptor<TTransform>     Superclass;
  typedef SmartPointer<Self>                         Pointer;
  typedef SmartPointer<const Self>                   ConstPointer;

  /** New macro for creation of through a Smart Pointer. */
  itkNewMacro( Self );

  /** Run-time type information (and related methods). */
  itkTypeMacro( BSplineTransformParametersAdaptor, TransformParametersAdaptor );

  /** Typedefs associated with the transform */
  typedef TTransform                                        TransformType;
  typedef typename TransformType::Pointer                   TransformPointer;
  typedef typename Superclass::ParametersType               ParametersType;
  typedef typename Superclass::ParametersValueType          ParametersValueType;

  typedef typename TransformType::OriginType                OriginType;
  typedef typename TransformType::SizeType                  SizeType;
  typedef typename TransformType::SpacingType               SpacingType;
  typedef typename TransformType::IndexType                 IndexType;
  typedef typename TransformType::MeshSizeType              MeshSizeType;
  typedef typename TransformType::DirectionType             DirectionType;
  typedef typename TransformType::PhysicalDimensionsType    PhysicalDimensionsType;


  typedef typename TransformType::ImageType                 ImageType;
  typedef typename ImageType::RegionType                    RegionType;
  typedef typename TransformType::CoefficientImageArray     CoefficientImageArray;

  /** Dimension of parameters. */
  itkStaticConstMacro( SpaceDimension, unsigned int, TransformType::SpaceDimension );

  /** Alternative method for setting the required mesh size. */
  void SetRequiredTransformDomainMeshSize( const MeshSizeType & );

  /** Get the required mesh size. */
  itkGetConstReferenceMacro( RequiredTransformDomainMeshSize, MeshSizeType );

  /** Alternative method for setting the required mesh size. */
  void SetRequiredTransformDomainPhysicalDimensions( const PhysicalDimensionsType & );

  /** Get the required physical dimensions. */
  itkGetConstReferenceMacro( RequiredTransformDomainPhysicalDimensions, PhysicalDimensionsType );

  /** Alternative method for setting the required origin. */
  void SetRequiredTransformDomainOrigin( const OriginType & );

  /** Get the required origin. */
  itkGetConstReferenceMacro( RequiredTransformDomainOrigin, OriginType );

  /** Alternative method for setting the required direction. */
  void SetRequiredTransformDomainDirection( const DirectionType & );

  /** Get the required direction. */
  itkGetConstReferenceMacro( RequiredTransformDomainDirection, DirectionType );

  virtual void SetRequiredFixedParameters( const ParametersType );

  /** Initialize the transform using the specified fixed parameters */
  virtual void AdaptTransformParameters();

protected:
  BSplineTransformParametersAdaptor();
  ~BSplineTransformParametersAdaptor();

  void PrintSelf( std::ostream & os, Indent indent ) const;

private:
  BSplineTransformParametersAdaptor( const Self & ); //purposely not implemented
  void operator=( const Self & );             //purposely not implemented

  /** Helper function to set m_RequiredFixedParameters */
  void UpdateRequiredFixedParameters();

  MeshSizeType                               m_RequiredTransformDomainMeshSize;
  OriginType                                 m_RequiredTransformDomainOrigin;
  DirectionType                              m_RequiredTransformDomainDirection;
  PhysicalDimensionsType                     m_RequiredTransformDomainPhysicalDimensions;

}; //class BSplineTransformParametersAdaptor
}  // namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkBSplineTransformParametersAdaptor.hxx"
#endif

#endif /* __itkBSplineTransformParametersAdaptor_h */