/usr/include/ITK-4.5/itkBioGeneNetwork.h is in libinsighttoolkit4-dev 4.5.0-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | /*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef __itkBioGeneNetwork_h
#define __itkBioGeneNetwork_h
#include "itkMacro.h"
#include <vector>
namespace itk
{
namespace bio
{
/** \class GeneNetwork
* \brief This class implements the abstraction of a biological gene network.
*
* This class is implemented to iteratively compute the state of the gene network
* following update rules (typical Partial Differential Equations).
*
* \ingroup ITKBioCell
*/
class GeneNetwork
{
public:
typedef std::vector< float > ProteomeType;
typedef std::vector< float > DomainsType;
public:
GeneNetwork();
virtual ~GeneNetwork();
void Copy(const GeneNetwork & genome);
private:
// This array contains the concentrations of each protein
// in the cell at a certain time.
ProteomeType m_ProteinConcentration;
// This array contains the concentrations of domain affinities
// in the cell at a certain time. Since each protein may
// have multiple domains and each domain has affinities
// for standard domains in the regulatory section of genes,
// this array is indexed by the domains in the regulatory
// section. The final value on each entry indicates the
// probability of a domain to be bound during a certain time
// interval.
DomainsType m_DomainConcentration;
};
} // end namespace bio
} // end namespace itk
#endif
|