This file is indexed.

/usr/include/ITK-4.5/itkCellInterface.h is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkCellInterface_h
#define __itkCellInterface_h

#include "itkObject.h"
#include <map>
#include "itkCellInterfaceVisitor.h"
#include "itkAutoPointer.h"
#include "itkArray.h"

// Define a macro for CellInterface sub-classes to use
// to define the Accept and GetTopologyId virtuals used
// by the MultiVisitor class
#define itkCellVisitMacro(TopologyId)                                                                \
  static int GetTopologyId()                                                                         \
    {                                                                                                \
    return TopologyId;                                                                               \
    }                                                                                                \
  virtual void Accept(CellIdentifier cellid, typename CellInterface< PixelType,                      \
                                                                    CellTraits >::MultiVisitor * mv) \
    {                                                                                                \
    typename CellInterfaceVisitor< PixelType, CellTraits >::Pointer v =                              \
      mv->GetVisitor(TopologyId);                                                                    \
    if ( v )                                                                                         \
      {                                                                                              \
      v->VisitFromCell(cellid, this);                                                                \
      }                                                                                              \
    }

// Define a macro for the common typedefs required by the
// classes deriving form CellInterface (included).
#define itkCellCommonTypedefs(celltype)                   \
  typedef celltype                  Self;                 \
  typedef AutoPointer< const Self > ConstSelfAutoPointer; \
  typedef AutoPointer< Self >       SelfAutoPointer;      \
  typedef Self *                    RawPointer;           \
  typedef const Self *ConstRawPointer

// Define a macro for the common typedefs required by the
// classes deriving form CellInterface (excluded).
#define itkCellInheritedTypedefs(superclassArg)                             \
  typedef superclassArg                             Superclass;             \
  typedef typename Superclass::PixelType            PixelType;              \
  typedef typename Superclass::CellType             CellType;               \
  typedef typename Superclass::CellAutoPointer      CellAutoPointer;        \
  typedef typename Superclass::CellConstAutoPointer CellConstAutoPointer;   \
  typedef typename Superclass::CellRawPointer       CellRawPointer;         \
  typedef typename Superclass::CellConstRawPointer  CellConstRawPointer;    \
  typedef typename Superclass::CellTraits           CellTraits;             \
  typedef typename Superclass::CoordRepType         CoordRepType;           \
  typedef typename Superclass::InterpolationWeightType                      \
  InterpolationWeightType;                                                  \
  typedef typename Superclass::PointIdentifier       PointIdentifier;       \
  typedef typename Superclass::PointIdIterator       PointIdIterator;       \
  typedef typename Superclass::PointIdConstIterator  PointIdConstIterator;  \
  typedef typename Superclass::CellIdentifier        CellIdentifier;        \
  typedef typename Superclass::CellFeatureIdentifier CellFeatureIdentifier; \
  typedef typename Superclass::CellFeatureIdentifier CellFeatureCount;      \
  typedef typename Superclass::PointType             PointType;             \
  typedef typename Superclass::VectorType            VectorType;            \
  typedef typename Superclass::PointsContainer       PointsContainer;       \
  typedef typename Superclass::UsingCellsContainer   UsingCellsContainer;   \
  typedef typename Superclass::CellGeometry          CellGeometry;          \
  typedef typename Superclass::ParametricCoordArrayType                     \
  ParametricCoordArrayType;                                                 \
  typedef typename Superclass::ShapeFunctionsArrayType                      \
  ShapeFunctionsArrayType;                                                  \
  itkStaticConstMacro(PointDimension, unsigned int, Superclass::PointDimension)

namespace itk
{
/** \class CellInterface
 *  \brief An abstract interface for cells.
 *
 * Define an abstract interface for cells.  Actual cell types derive from
 * this class.
 *
 * \tparam TPixelType The type stored with an entity (cell, point, or boundary).
 * \tparam TCellTraits Type information for cell.
 *
 * \ingroup MeshObjects
 * \ingroup ITKCommon
 */
template<
  typename TPixelType,
  typename TCellTraits
  >
class CellInterface
{
public:

  /** Standard class typedefs. */
  itkCellCommonTypedefs(CellInterface);

  /** Save the PixelType template parameter. */
  typedef TPixelType PixelType;

  /** Save the CellTraits template parameter. */
  typedef TCellTraits CellTraits;

  /** Save type information for this cell. */
  typedef typename CellTraits::CoordRepType            CoordRepType;
  typedef typename CellTraits::InterpolationWeightType InterpolationWeightType;
  typedef typename CellTraits::PointIdentifier         PointIdentifier;
  typedef typename CellTraits::PointIdIterator         PointIdIterator;
  typedef typename CellTraits::PointIdConstIterator    PointIdConstIterator;
  typedef typename CellTraits::CellIdentifier          CellIdentifier;
  typedef typename CellTraits::CellFeatureIdentifier   CellFeatureIdentifier;
  typedef typename CellTraits::PointType               PointType;
  typedef typename CellTraits::PointsContainer         PointsContainer;
  typedef typename CellTraits::UsingCellsContainer     UsingCellsContainer;

  ///NOTE: it should normally be defined in the traits
  typedef typename PointType::VectorType VectorType;

  /** Save the dimension from the template parameters. */
  itkStaticConstMacro(PointDimension, unsigned int, CellTraits::PointDimension);

  /** An iterator through the UsingCellsContainer. */
  typedef typename UsingCellsContainer::iterator UsingCellsContainerIterator;

  /** Give this and all derived classes quick access to the base cell type. */
  typedef CellInterface        CellType;
  typedef SelfAutoPointer      CellAutoPointer;
  typedef ConstSelfAutoPointer CellConstAutoPointer;
  typedef RawPointer           CellRawPointer;
  typedef ConstRawPointer      CellConstRawPointer;

  /** A useful rename. */
  typedef CellFeatureIdentifier CellFeatureCount;

  /**  Cell Visitor interfaces */
  enum CellGeometry { VERTEX_CELL = 0, LINE_CELL, TRIANGLE_CELL,
                      QUADRILATERAL_CELL, POLYGON_CELL, TETRAHEDRON_CELL, HEXAHEDRON_CELL,
                      QUADRATIC_EDGE_CELL, QUADRATIC_TRIANGLE_CELL,
                      LAST_ITK_CELL, MAX_ITK_CELLS = 255 };

  /** Types needed to contour the cells */
  typedef Array< CoordRepType >            ParametricCoordArrayType;
  typedef Array< InterpolationWeightType > ShapeFunctionsArrayType;

//  static int GetNextUserCellId(); // never return > MAX_INTERFACE

  /** \class MultiVisitor
   * \brief A visitor that can visit different cell types in a mesh.
   * CellInterfaceVisitor instances can be registered for each
   * type of cell that needs to be visited.
   *
   * \ingroup MeshAccess
   * \ingroup ITKCommon
   */
  class MultiVisitor:public LightObject
  {
public:
    /**  Visitor type, because VisualC++ 6.0 does not like
     *  Visitor being a nested type of CellInterfaceVisitor   */
    typedef CellInterfaceVisitor< TPixelType, TCellTraits > VisitorType;

    /** Standard class typedefs.   */
    typedef MultiVisitor         Self;
    typedef SmartPointer< Self > Pointer;

    /** Method for creation through the object factory.   */
    //itkNewMacro(Self);
    static Pointer New(void) { Pointer smartPtr = new Self; smartPtr->UnRegister(); return smartPtr; }

    /** Run-time type information (and related methods).   */
    itkTypeMacro(MultiVisitor, LightObject);

    /** Typedefs for the visitor class.   */
    typedef typename VisitorType::Pointer VisitorPointer;
    typedef typename std::map< int, VisitorPointer >::value_type
    VisitorPointerValueType;

public:
    VisitorType * GetVisitor(int id)
    {
      if ( id < LAST_ITK_CELL )
        {
        return m_Visitors[id];
        }
      else
        {
        typename std::map< int, typename VisitorType::Pointer >::iterator
        pos = m_UserDefined.find(id);
        if ( pos != m_UserDefined.end() )
          {
          return ( *pos ).second;
          }
        }
      return 0;
    }

    void AddVisitor(VisitorType *v)
    {
      int id = v->GetCellTopologyId();

      if ( id < LAST_ITK_CELL )
        {
        m_Visitors[id] = v;
        }
      else
        {
        m_UserDefined.insert( VisitorPointerValueType(id, v) );
        }
    }

    virtual ~MultiVisitor() {}

protected:
    VisitorPointer m_Visitors[LAST_ITK_CELL];      // fixed array set to the
                                                   // size
                                                   // from the enum
    std::map< int, VisitorPointer > m_UserDefined; // user defined cell types
                                                   // go here
  };

  /** This must be implemented by all sub-classes of CellInterface */
  virtual void Accept(CellIdentifier cellId, MultiVisitor *) = 0;

  /**  Return the type of the cell (one of the CellGeometry enums
   *   listed above). */
  virtual CellGeometry GetType(void) const = 0;

  /** Create a new copy of this cell.  This is provided so that a copy can
   * be made without knowing the cell type. */
  virtual void MakeCopy(CellAutoPointer &) const = 0;

  /** Get the topological dimension of this cell. */
  virtual unsigned int GetDimension(void) const = 0;

  /** Get the interpolation order of the cell.  Usually linear. */
  virtual unsigned int GetInterpolationOrder(void) const;

  /** Get the number of points required to define the cell. */
  virtual unsigned int GetNumberOfPoints(void) const = 0;

  /** Get the number of boundary features of a given dimension on this cell. */
  virtual CellFeatureCount GetNumberOfBoundaryFeatures(int dimension) const = 0;

  /** Get the boundary feature corresponding to the given dimension and Id. */
  virtual bool GetBoundaryFeature(int dimension, CellFeatureIdentifier,
                                  CellAutoPointer &) = 0;

  /** Get the point id list used by the cell in a form suitable to pass to
   * SetPointIds(first) on another cell.  This is equivalent to
   * PointIdsBegin() const. */
  virtual PointIdConstIterator GetPointIds(void) const;

  /** Set the point id list used by the cell.  It is assumed that the given
   * iterator can be incremented and safely de-referenced enough times to
   * get all the point ids needed by the cell. */
  virtual void SetPointIds(PointIdConstIterator first) = 0;

  /** Set the point id list used by the cell.  It is assumed that the range
   * of iterators [first, last) contains the correct number of points needed to
   * define the cell.  The position *last is NOT referenced, so it can safely
   * be one beyond the end of an array or other container. */
  virtual void SetPointIds(PointIdConstIterator first,
                           PointIdConstIterator last) = 0;

  /** Set the point identifier for a given spot in the point list
   *  for the cell. */
  virtual void SetPointId(int localId, PointIdentifier) = 0;

  /** Get a begin iterator to the list of point identifiers used by the cell. */
  virtual PointIdIterator PointIdsBegin(void) = 0;

  /** Get a const begin iterator to the list of point identifiers used
   * by the cell. */
  virtual PointIdConstIterator PointIdsBegin(void) const = 0;

  /** Get an end iterator to the list of point identifiers used by the cell. */
  virtual PointIdIterator PointIdsEnd(void) = 0;

  /** Get a const end iterator to the list of point identifiers used
   * by the cell. */
  virtual PointIdConstIterator PointIdsEnd(void) const = 0;

  /** Get/Set the point id list used by the cell */
  typedef itk::Array<PointIdentifier> PointIdentifierContainerType;
  PointIdentifierContainerType GetPointIdsContainer() const;
  void SetPointIdsContainer( const PointIdentifierContainerType & );

  /** Given the parametric coordinates of a point in the cell
   * (pCoords[CellDimension]), get the closest cell boundary feature of
   * topological dimension CellDimension-1.  If the "inside" pointer is not
   * NULL, the flag is set to indicate whether the point is inside the cell. */
  virtual bool GetClosestBoundary(CoordRepType[], bool *, CellAutoPointer &)
  { return false; }

  /** Given the geometric coordinates of a point (coord[PointDimension]),
   * return whether it is inside the cell.  Also perform the following
   * calculations, if the corresponding result pointers are not NULL:
   *
   *  - Find the closest point in or on the cell to the given point
   *     (Returns through pointer to array: closestPoint[PointDimension]).
   *
   *  - Get the cell's parametric coordinates for the given point
   *     (Returns through pointer to array: pCoords[CellDimension]).
   *
   *  - Get the square of the distance between the point and the cell
   *     (this is the distance from the point to the closest point,
   *      returned through "dist2" pointer).
   *
   *  - Get the interpolation weights for the cell
   *     (Returns through pointer to array: weights[NumberOfPoints]). */
  virtual bool EvaluatePosition(CoordRepType *,
                                PointsContainer *,
                                CoordRepType *,
                                CoordRepType[],
                                double *,
                                InterpolationWeightType *)
  { return bool(); }

  /** Given the parametric coordinates of a point in the cell
   *  determine the value of its Shape Functions
   *  returned through an itkArray<InterpolationWeightType>).  */
  virtual void EvaluateShapeFunctions(
    const ParametricCoordArrayType &,
    ShapeFunctionsArrayType  &) const {}

  /** Intersect the cell with a line given by an origin (origin[PointDimension])
   * and direction (direction[PointDimension]).  The intersection point
   * found will be within the given tolerance of the real intersection.
   * Get the following results if the corresponding pointers are not NULL:
   *
   *  - The intersection point's geometric coordinates (returned through
   *     pointer to array: coords[PointDimension]).
   *
   *  - The line's parametric coordinate of the intersection point
   *     (returned through "t" pointer).
   *
   *  - The cell's parametric coordinates of the intersection point
   *     (returned through pointer to array: pCoords[CellDimension]).
   *
   * Returns whether an intersection exists within the given tolerance. */
  virtual bool IntersectWithLine(CoordRepType[PointDimension],
                                 CoordRepType[PointDimension],
                                 CoordRepType,
                                 CoordRepType[PointDimension],
                                 CoordRepType *,
                                 CoordRepType[]) { return bool(); }

  /** Compute cell bounding box and store in the user-provided array.
   * Array is ordered (xmin, xmax,  ymin, ymax, ....).  A pointer to the
   * array is returned for convenience.  This allows code like:
   * "CoordRep* bounds = cell->GetBoundingBox(new CoordRep[6]);". */
  CoordRepType * GetBoundingBox(CoordRepType[PointDimension * 2]) { return NULL; }

  /** Compute the square of the diagonal length of the bounding box. */
  CoordRepType GetBoundingBoxDiagonalLength2(void) { return NULL; }

  /** Intersect the given bounding box (bounds[PointDimension*2]) with a line
   * given by an origin (origin[PointDimension]) and direction
   * (direction[PointDimension]). Get the following results if the
   * corresponding pointers are not NULL:
   *
   *  - The intersection point's geometric coordinates (returned through
   *     pointer to array: coords[PointDimension]).
   *
   *  - The line's parametric coordinate of the intersection point
   *     (returned through "t" pointer).
   *
   * Returns whether an intersection exists. */
  virtual bool IntersectBoundingBoxWithLine(CoordRepType[PointDimension * 2],
                                            CoordRepType[PointDimension],
                                            CoordRepType[PointDimension],
                                            CoordRepType[PointDimension],
                                            CoordRepType *) { return bool(); }

  /** Interface to the boundary form of the cell to set/get UsingCells.
   * See the boundary wrapper source for more information. */

  /** Returns true if the cell has been explicitly assigned as a
   *  boundary, false otherwise. */
  virtual bool IsExplicitBoundary(void);

  /**
   * Register the fact that this cell is a part of the boundary of the
   * cell \a cellId, by adding \a cellId to the UsingCellsContainer.
   */
  virtual void AddUsingCell(CellIdentifier cellId);

  /**
   * Remove a cell from the UsingCellsContainer.
   */
  virtual void RemoveUsingCell(CellIdentifier cellId);

  /**
   * Test if a cell is in the UsingCellsContainer.  A result of \c true
   * indicates that this cell is part of the boundary of the cell \a
   * cellId, assuming that boundary information has been recorded.
   */
  virtual bool IsUsingCell(CellIdentifier cellId);

  /**
   * Get the number of cells in the UsingCellsContainer.
   */
  virtual unsigned int GetNumberOfUsingCells(void);

#if !defined( CABLE_CONFIGURATION )
  /**
   * Get a begin iterator for the UsingCellsContainer.
   */
  virtual UsingCellsContainerIterator UsingCellsBegin(void);

  /**
   * Get an end iterator for the UsingCellsContainer.
   */
  virtual UsingCellsContainerIterator UsingCellsEnd(void);

#endif

  /** Standard part of every itk Object. */
  itkTypeMacro(CellInterface, LightObject);

public:
  CellInterface() {}
  virtual ~CellInterface() {}
  /** Cell internal utility routines. */

  /** Get the geometric position of a point. */
//  bool GetPointPosition(PointsContainer*, int localId, Point*)=0;

protected:
  /** Store the set of cells using this boundary. */
  UsingCellsContainer m_UsingCells;

private:
  CellInterface(const Self &);  //purposely not implemented
  void operator=(const Self &); //purposely not implemented
};

/** \class CellTraitsInfo
 * \brief A simple utility class to define the cell type inside a mesh type
 * structure definition.  This just makes a copy of existing type information
 * that is needed for a cell type template parameter.
 *
 * During a mesh type definition, after the appropriate types and values
 * have been defined, just have the line:
 \verbatim
 typedef itkMakeCellTraitsMacro  CellTraits;
 \endverbatim
 *
 * itkMakeCellTraitsMacro is a macro front-end to automatically fill in the
 * template parameters for the CellTraitsInfo structure inside a mesh
 * type structure definition.
 *
 * \ingroup MeshObjects
 * \ingroup ITKCommon
 */
template< int VPointDimension, typename TCoordRep,
          typename TInterpolationWeight, typename TPointIdentifier,
          typename TCellIdentifier, typename TCellFeatureIdentifier,
          typename TPoint, typename TPointsContainer,
          typename TUsingCellsContainer >
class CellTraitsInfo
{
public:
  itkStaticConstMacro(PointDimension, unsigned int, VPointDimension);
  typedef TCoordRep              CoordRepType;
  typedef TInterpolationWeight   InterpolationWeightType;
  typedef TPointIdentifier       PointIdentifier;
  typedef TCellIdentifier        CellIdentifier;
  typedef TCellFeatureIdentifier CellFeatureIdentifier;
  typedef TPoint                 PointType;
  typedef TPointsContainer       PointsContainer;
  typedef TUsingCellsContainer   UsingCellsContainer;
  typedef PointIdentifier *      PointIdIterator;

  typedef const PointIdentifier *PointIdConstIterator;
};

#define itkMakeCellTraitsMacro                                           \
  CellTraitsInfo < itkGetStaticConstMacro(PointDimension), CoordRepType, \
  InterpolationWeightType,                                               \
  PointIdentifier, CellIdentifier, CellFeatureIdentifier,                \
  PointType, PointsContainer, UsingCellsContainer >
} // end namespace itk

#if !defined( CABLE_CONFIGURATION )
#ifndef ITK_MANUAL_INSTANTIATION
#include "itkCellInterface.hxx"
#endif
#endif

#endif