This file is indexed.

/usr/include/ITK-4.5/itkCenteredRigid2DTransform.hxx is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkCenteredRigid2DTransform_hxx
#define __itkCenteredRigid2DTransform_hxx

#include "itkCenteredRigid2DTransform.h"

namespace itk
{
// Constructor with default arguments
template <typename TScalar>
CenteredRigid2DTransform<TScalar>
::CenteredRigid2DTransform() :
  Superclass(ParametersDimension)
{
}

// Constructor with arguments
template <typename TScalar>
CenteredRigid2DTransform<TScalar>::CenteredRigid2DTransform(unsigned int spaceDimension,
                                                                unsigned int parametersDimension) :
  Superclass(spaceDimension, parametersDimension)
{
}

//
// Set Parameters
//
// Parameters are ordered as:
//
// p[0]   = angle
// p[1:2} = center of rotation coordinates
// p[3:4} = translation components
//
//
template <typename TScalar>
void
CenteredRigid2DTransform<TScalar>
::SetParameters(const ParametersType & parameters)
{
  itkDebugMacro(<< "Setting parameters " << parameters);

  // Save parameters
  if( &parameters != &(this->m_Parameters) )
    {
    this->m_Parameters = parameters;
    }

  // Set the angle
  const TScalar angle = parameters[0];
  this->SetVarAngle(angle);
  // Set the center
  InputPointType center;
  for( unsigned int i = 0; i < SpaceDimension; i++ )
    {
    center[i] = parameters[i + 1];
    }
  this->SetVarCenter(center);

  // Set the translation
  OutputVectorType translation;
  for( unsigned int j = 0; j < SpaceDimension; j++ )
    {
    translation[j] = parameters[j + 1 + SpaceDimension];
    }
  this->SetVarTranslation(translation);

  // Update matrix and offset
  this->ComputeMatrix();
  this->ComputeOffset();

  // Modified is always called since we just have a pointer to the
  // parameters and cannot know if the parameters have changed.
  this->Modified();

  itkDebugMacro(<< "After setting parameters ");
}

//
// Get Parameters
//
// Parameters are ordered as:
//
// p[0]   = angle
// p[1:2} = center of rotation coordinates
// p[3:4} = translation components
//
template <typename TScalar>
const typename CenteredRigid2DTransform<TScalar>::ParametersType
& CenteredRigid2DTransform<TScalar>
::GetParameters(void) const
  {
  itkDebugMacro(<< "Getting parameters ");

  // Get the angle
  this->m_Parameters[0] = this->GetAngle();
  // Get the center
  for( unsigned int i = 0; i < SpaceDimension; i++ )
    {
    this->m_Parameters[i + 1] = this->GetCenter()[i];
    }
  // Get the translation
  for( unsigned int j = 0; j < SpaceDimension; j++ )
    {
    this->m_Parameters[j + 1 + SpaceDimension] = this->GetTranslation()[j];
    }

  itkDebugMacro(<< "After getting parameters " << this->m_Parameters);

  return this->m_Parameters;
  }

template <typename TScalar>
void
CenteredRigid2DTransform<TScalar>
::ComputeJacobianWithRespectToParameters(const InputPointType & p, JacobianType & jacobian) const
{
  const double ca = vcl_cos( this->GetAngle() );
  const double sa = vcl_sin( this->GetAngle() );

  jacobian.SetSize( 2, this->GetNumberOfLocalParameters() );
  jacobian.Fill(0.0);

  const double cx = this->GetCenter()[0];
  const double cy = this->GetCenter()[1];

  // derivatives with respect to the angle
  jacobian[0][0] = -sa * ( p[0] - cx ) - ca * ( p[1] - cy );
  jacobian[1][0] =  ca * ( p[0] - cx ) - sa * ( p[1] - cy );

  // compute derivatives with respect to the center part
  // first with respect to cx
  jacobian[0][1] = 1.0 - ca;
  jacobian[1][1] =     -sa;
  // then with respect to cy
  jacobian[0][2] =       sa;
  jacobian[1][2] = 1.0 - ca;

  // compute derivatives with respect to the translation part
  // first with respect to tx
  jacobian[0][3] = 1.0;
  jacobian[1][3] = 0.0;
  // first with respect to ty
  jacobian[0][4] = 0.0;
  jacobian[1][4] = 1.0;
}

template <typename TScalar>
void
CenteredRigid2DTransform<TScalar>
::SetFixedParameters( const ParametersType & itkNotUsed(parameters) )
{
  // no fixed parameters
}

template <typename TScalar>
const typename CenteredRigid2DTransform<TScalar>::ParametersType
& CenteredRigid2DTransform<TScalar>
::GetFixedParameters(void) const
  {
  // return dummy parameters
  this->m_FixedParameters.SetSize(0);
  return this->m_FixedParameters;
  }

// Create and return an inverse transformation
template <typename TScalar>
void
CenteredRigid2DTransform<TScalar>::CloneInverseTo(Pointer & result) const
{
  result = New();
  this->GetInverse( result.GetPointer() );
}

// return an inverse transformation
template <typename TScalar>
bool
CenteredRigid2DTransform<TScalar>::GetInverse(Self *inverse) const
{
  if( !inverse )
    {
    return false;
    }

  inverse->SetCenter( this->GetCenter() );  // inverse have the same center
  inverse->SetAngle( -this->GetAngle() );
  inverse->SetTranslation( -( this->GetInverseMatrix()
                              * this->GetTranslation() ) );
  return true;
}

// Return an inverse of this transform
template <typename TScalar>
typename CenteredRigid2DTransform<TScalar>::InverseTransformBasePointer
CenteredRigid2DTransform<TScalar>
::GetInverseTransform() const
{
  Pointer inv = New();

  return GetInverse(inv) ? inv.GetPointer() : NULL;
}

// Create and return an clone transformation
template <typename TScalar>
void
CenteredRigid2DTransform<TScalar>::CloneTo(Pointer & result) const
{
  result = New();
  result->SetCenter( this->GetCenter() );
  result->SetAngle( this->GetAngle() );
  result->SetTranslation( this->GetTranslation() );
}

// Print self
template <typename TScalar>
void
CenteredRigid2DTransform<TScalar>::PrintSelf(std::ostream & os, Indent indent) const
{
  this->Superclass::PrintSelf(os, indent);
}

} // namespace

#endif