This file is indexed.

/usr/include/ITK-4.5/itkImageRegion.hxx is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
/*=========================================================================
 *
 *  Portions of this file are subject to the VTK Toolkit Version 3 copyright.
 *
 *  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
 *
 *  For complete copyright, license and disclaimer of warranty information
 *  please refer to the NOTICE file at the top of the ITK source tree.
 *
 *=========================================================================*/
#ifndef __itkImageRegion_hxx
#define __itkImageRegion_hxx

#include "itkImageRegion.h"

namespace itk
{
/**
 * Instantiate object.
 */
template< unsigned int VImageDimension >
ImageRegion< VImageDimension >
::ImageRegion()
{
  m_Index.Fill(0);
  m_Size.Fill(0);
}

/**
 * Destructor for the ImageRegion class.
 */
template< unsigned int VImageDimension >
ImageRegion< VImageDimension >
::~ImageRegion()
{}

template< unsigned int VImageDimension >
typename ImageRegion< VImageDimension >::IndexType
ImageRegion< VImageDimension >
::GetUpperIndex() const
{
  IndexType idx;
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    idx[i] = m_Index[i] + m_Size[i] - 1;
    }

  return idx;
}

template< unsigned int VImageDimension >
void
ImageRegion< VImageDimension >
::SetUpperIndex( const IndexType & idx )
{
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    m_Size[i] = idx[i] - m_Index[i] + 1;
    }
}

template< unsigned int VImageDimension >
void
ImageRegion< VImageDimension >
::ComputeOffsetTable(OffsetTableType offsetTable) const
{
  OffsetValueType num=1;

  offsetTable[0] = num;
  for (unsigned int i=0; i < ImageDimension; i++)
    {
    num *= m_Size[i];
    offsetTable[i+1] = num;
    }
}

template< unsigned int VImageDimension >
typename ImageRegion< VImageDimension >::SizeValueType
ImageRegion< VImageDimension >
::GetNumberOfPixels() const
{
  SizeValueType numPixels = 1;

  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    numPixels *= m_Size[i];
    }

  return numPixels;
}

template< unsigned int VImageDimension >
void
ImageRegion< VImageDimension >
::PrintSelf(std::ostream & os, Indent indent) const
{
  Superclass::PrintSelf(os, indent);

  os << indent << "Dimension: " << this->GetImageDimension() << std::endl;
  os << indent << "Index: " << this->GetIndex() << std::endl;
  os << indent << "Size: " << this->GetSize() << std::endl;
}

template< unsigned int VImageDimension >
void
ImageRegion< VImageDimension >
::PadByRadius(OffsetValueType radius)
{
  SizeType radiusVector;

  for ( unsigned int i = 0; i < VImageDimension; ++i )
    {
    radiusVector[i] = radius;
    }

  this->PadByRadius(radiusVector);
}

template< unsigned int VImageDimension >
void
ImageRegion< VImageDimension >
::PadByRadius(const SizeType & radius)
{
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    m_Size[i] += 2 * radius[i];
    m_Index[i] -= static_cast< OffsetValueType >( radius[i] );
    }
}

template< unsigned int VImageDimension >
void
ImageRegion< VImageDimension >
::PadByRadius(const IndexValueArrayType radius)
{
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    m_Size[i] += 2 * radius[i];
    m_Index[i] -= static_cast< OffsetValueType >( radius[i] );
    }
}

template< unsigned int VImageDimension >
bool
ImageRegion< VImageDimension >
::ShrinkByRadius(OffsetValueType radius)
{
  SizeType radiusVector;

  for ( unsigned int i = 0; i < VImageDimension; ++i )
    {
    radiusVector[i] = radius;
    }

  return this->ShrinkByRadius(radiusVector);
}

template< unsigned int VImageDimension >
bool
ImageRegion< VImageDimension >
::ShrinkByRadius(const SizeType & radius)
{
  bool shrunkSuccessfully = true;
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    if( m_Size[i] <= 2 * radius[i] )
      {
      shrunkSuccessfully = false;
      }
    else
      {
      m_Size[i] -= 2 * radius[i];
      m_Index[i] += static_cast< OffsetValueType >( radius[i] );
      }
    }
  return shrunkSuccessfully;
}

template< unsigned int VImageDimension >
bool
ImageRegion< VImageDimension >
::ShrinkByRadius(const IndexValueArrayType radius)
{
  bool shrunkSuccessfully = true;
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    if( static_cast< IndexValueType >( m_Size[i] ) <= 2 * radius[i] )
      {
      shrunkSuccessfully = false;
      }
    else
      {
      m_Size[i] -= 2 * radius[i];
      m_Index[i] += static_cast< OffsetValueType >( radius[i] );
      }
    }
  return shrunkSuccessfully;
}

template< unsigned int VImageDimension >
bool
ImageRegion< VImageDimension >
::Crop(const Self & region)
{
  OffsetValueType crop;
  unsigned int    i;
  bool            cropPossible = true;

  // Can we crop?
  for ( i = 0; i < VImageDimension && cropPossible; i++ )
    {
    // Is left edge of current region to the right of the right edge
    // of the region to crop with? (if so, we cannot crop)
    if ( m_Index[i] >= region.GetIndex()[i]
         + static_cast< OffsetValueType >( region.GetSize()[i] ) )
      {
      cropPossible = false;
      }
    // If right edge of the current region to the left of the left
    // edge of the region to crop with? (if so, we cannot crop)
    if ( m_Index[i] + static_cast< OffsetValueType >( m_Size[i] ) <= region.GetIndex()[i] )
      {
      cropPossible = false;
      }
    }

  // if we cannot crop, return without changing anythin
  if ( !cropPossible )
    {
    return cropPossible;
    }

  // we can crop, so crop
  for ( i = 0; i < VImageDimension; i++ )
    {
    // first check the start index
    if ( m_Index[i] < region.GetIndex()[i] )
      {
      // how much do we need to adjust
      crop = region.GetIndex()[i] - m_Index[i];

      // adjust the start index and the size of the current region
      m_Index[i] += crop;
      m_Size[i] -= static_cast< SizeValueType >( crop );
      }
    // now check the final size
    if ( m_Index[i] + static_cast< OffsetValueType >( m_Size[i] )
         > region.GetIndex()[i] + static_cast< OffsetValueType >( region.GetSize()[i] ) )
      {
      // how much do we need to adjust
      crop = m_Index[i] + static_cast< OffsetValueType >( m_Size[i] )
             - region.GetIndex()[i] - static_cast< OffsetValueType >( region.GetSize()[i] );

      // adjust the size
      m_Size[i] -= static_cast< SizeValueType >( crop );
      }
    }

  return cropPossible;
}

template< unsigned int VImageDimension >
typename ImageRegion< VImageDimension >::SliceRegion
ImageRegion< VImageDimension >
::Slice(const unsigned int dim) const
{
  if ( dim >= VImageDimension )
    {
    itkGenericExceptionMacro(
      << "The dimension to remove: " << dim
      << " is greater than the dimension of the image: " << VImageDimension);
    }

  Index< SliceDimension > sliceIndex;
  Size< SliceDimension >  sliceSize;

  sliceIndex.Fill(0);
  sliceSize.Fill(0);
  unsigned int ii = 0;
  for ( unsigned int i = 0; i < VImageDimension; i++ )
    {
    if ( i != dim )
      {
      sliceIndex[ii] = m_Index[i];
      sliceSize[ii] = m_Size[i];
      ++ii;
      }
    }

  return ImageRegion< SliceDimension >(sliceIndex, sliceSize);
}

template< unsigned int VImageDimension >
std::ostream & operator<<(std::ostream & os, const ImageRegion< VImageDimension > & region)
{
  region.Print(os);
  return os;
}
} // end namespace itk

#endif