This file is indexed.

/usr/include/ITK-4.5/itkKLMSegmentationBorder.h is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkKLMSegmentationBorder_h
#define __itkKLMSegmentationBorder_h

#include "itkSegmentationBorder.h"
#include "itkKLMSegmentationRegion.h"
#include "itkMacro.h"

#include "vnl/vnl_math.h"
#include "vnl/vnl_vector.h"

namespace itk
{
/** \class KLMDynamicBorderArray
 * \brief  Object maintaining a reference to a list of borders associated
 * with a region.
 *
 * This is a tiny class similar to smart pointers that maintains a reference
 * to a list of borders pointed by a region.
 *
 * \ingroup RegionGrowingSegmentation
 * \ingroup ITKKLMRegionGrowing
 */

template< typename TBorder >
class KLMDynamicBorderArray
{
public:
  /** Greater than operators defined to work with both static objects
   * or pointer to objects.  In the degenerate
   *  case of an image where all (or many) Lambda's are equal to some
   *  constant value, this operator will ensure that the future
   *  merged regions do not gain more borders than other regions,
   *  thus avoiding pathologically slow behavior.
   */
  bool operator>(const KLMDynamicBorderArray< TBorder > & rhs) const
  {
    if ( m_Pointer->GetLambda() == rhs.m_Pointer->GetLambda() )
      {
      if ( m_Pointer->GetLambda() < 0 )
        {
        return ( m_Pointer > rhs.m_Pointer );
        }
      else
        {
        // The purpose of this comparison is to not let any one region
        // get more borders than another region.  In the degenerate
        // case of an image where the Lambdas are always equal to some
        // constant C, allowing a single region to be repeatedly
        // merged so that it gains many borders will result in
        // pathologically slow behavior.
        double v1 = vnl_math_max(
          static_cast< double >( m_Pointer->GetRegion1()->GetRegionBorderSize() ),
          static_cast< double >( m_Pointer->GetRegion2()->GetRegionBorderSize() ) );

        double v2 = vnl_math_max(
          static_cast< double >( rhs.m_Pointer->GetRegion1()->GetRegionBorderSize() ),
          static_cast< double >( rhs.m_Pointer->GetRegion2()->GetRegionBorderSize() ) );

        return ( v1 > v2 );
        }
      }
    return ( m_Pointer->GetLambda() > rhs.m_Pointer->GetLambda() );
  }

  bool operator>(const KLMDynamicBorderArray< TBorder > *rhs) const
  {
    if ( m_Pointer->GetLambda() == rhs->m_Pointer->GetLambda() )
      {
      if ( m_Pointer->GetLambda() < 0 )
        {
        return ( m_Pointer > rhs->m_Pointer );
        }
      else
        {
        // The purpose of this comparison is to not let any one region
        // get more borders than another region.  In the degenerate
        // case of an image where the Lambdas are always equal to some
        // constant C, allowing a single region to be repeatedly
        // merged so that it gains many borders will result in
        // pathologically slow behavior.
        double v1 = vnl_math_max(
          static_cast< double >( m_Pointer->GetRegion1()->GetRegionBorderSize() ),
          static_cast< double >( m_Pointer->GetRegion2()->GetRegionBorderSize() ) );

        double v2 = vnl_math_max(
          static_cast< double >( rhs->m_Pointer->GetRegion1()->GetRegionBorderSize() ),
          static_cast< double >( rhs->m_Pointer->GetRegion2()->GetRegionBorderSize() ) );

        return ( v1 > v2 );
        }
      }
    return ( m_Pointer->GetLambda() > rhs->m_Pointer->GetLambda() );
  }

  TBorder *m_Pointer;
};

/** \class KLMSegmentationBorder
 * \brief Base class for KLMSegmentationBorder object
 *
 * itkKLMSegmentationBorder is the base class for the KLMSegmentationBorder
 * objects. It provides the basic function definitons that are inherent to a
 * KLMSegmentationBorder objects.
 *
 * This class implements the border object that is used in particular with
 * the KLM algorithm (see also KLMRegionGrowImageFilter). The border is
 * defined by the adjacency of two regions. The parameter Lambda ascertains
 * the importance of the border in defining the regions. The higher the
 * values of Lambda the more dominant is its presence in the a region. In
 * case of removal of a border during the region growing process the one with
 * least Lambda value is eliminated.
 *
 * \ingroup RegionGrowingSegmentation
 * \ingroup ITKKLMRegionGrowing
 */

class KLMSegmentationRegion;

class KLMSegmentationBorder:public SegmentationBorder
{
public:
  /** Standard class typedefs. */
  typedef KLMSegmentationBorder      Self;
  typedef SegmentationBorder         Superclass;
  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro(KLMSegmentationBorder, SegmentationBorder);

  /** Set the region 1 associated with the border */
  void SetRegion1(KLMSegmentationRegion *Region1);

  /** Get the region 1 associated with the border. */
  KLMSegmentationRegion * GetRegion1();

  /** Set the region 2 associated with the border. */
  void SetRegion2(KLMSegmentationRegion *Region2);

  /** Get the region 2 associated with the border. */
  KLMSegmentationRegion * GetRegion2();

  /** Set/Get the Lambda parameter associate with the borders
   * in the KLM algorithm */
  itkSetMacro(Lambda, double);
  itkGetConstReferenceMacro(Lambda, double);

  /** Evaluate the Lambda for a given border. */
  void EvaluateLambda();

  /** Print the data associated with each border. */
  void PrintBorderInfo();

protected:
  /** Constructor. */
  KLMSegmentationBorder();

  /** Destructor. */
  ~KLMSegmentationBorder();

  /** Print self identity */
  void PrintSelf(std::ostream & os, Indent indent) const;

private:
  KLMSegmentationBorder(const Self &); //purposely not implemented
  void operator=(const Self &);        //purposely not implemented

  double                 m_Lambda;
  KLMSegmentationRegion *m_Region1;
  KLMSegmentationRegion *m_Region2;
};
} // end namespace itk

#endif