This file is indexed.

/usr/include/ITK-4.5/itkLevelSetEquationPropagationTerm.hxx is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

#ifndef __itkLevelSetEquationPropagationTerm_hxx
#define __itkLevelSetEquationPropagationTerm_hxx

#include "itkLevelSetEquationPropagationTerm.h"
#include "itkCastImageFilter.h"

namespace itk
{
template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::LevelSetEquationPropagationTerm()
{
  this->m_TermName = "Propagation term";
  this->m_RequiredData.insert( "BackwardGradient" );
  this->m_RequiredData.insert( "ForwardGradient" );
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::~LevelSetEquationPropagationTerm()
{
}


template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
void
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::InitializeParameters()
{
  this->SetUp();

  if( this->m_PropagationImage.IsNull() )
    {
    typedef CastImageFilter< TInput, TPropagationImage > CastFilterType;
    typename CastFilterType::Pointer castFilter = CastFilterType::New();
    castFilter->SetInput( this->m_Input );
    castFilter->Update();

    this->m_PropagationImage = castFilter->GetOutput();
    }
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
void
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::Initialize( const LevelSetInputIndexType& )
{
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
void
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::Update()
{
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
void
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::UpdatePixel( const LevelSetInputIndexType& itkNotUsed( iP ),
               const LevelSetOutputRealType& itkNotUsed( oldValue ),
               const LevelSetOutputRealType& itkNotUsed( newValue ) )
{
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
typename LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >::LevelSetOutputRealType
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::PropagationSpeed( const LevelSetInputIndexType& iP ) const
{
  return ( static_cast< LevelSetOutputRealType >( this->m_PropagationImage->GetPixel(iP) ) );
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
typename LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >::LevelSetOutputRealType
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::Value( const LevelSetInputIndexType& iP )
{
  LevelSetGradientType backwardGradient = this->m_CurrentLevelSetPointer->EvaluateBackwardGradient( iP );
  LevelSetGradientType forwardGradient  = this->m_CurrentLevelSetPointer->EvaluateForwardGradient( iP );

  const LevelSetOutputRealType zero = NumericTraits< LevelSetOutputRealType >::Zero;

  //
  // Construct upwind gradient values for use in the propagation speed term:
  //  $\beta G(\mathbf{x})\mid\nabla\phi\mid$
  //
  // The following scheme for ``upwinding'' in the normal direction is taken
  // from Sethian, Ch. 6 as referenced above.411
  //
  LevelSetOutputRealType propagation_gradient = zero;

  for ( unsigned int i = 0; i < ImageDimension; i++ )
    {
    propagation_gradient +=
      vnl_math_sqr( vnl_math_max( backwardGradient[i], zero ) ) +
      vnl_math_sqr( vnl_math_min( forwardGradient[i],  zero ) );
    }

  propagation_gradient *= this->PropagationSpeed( iP );

  return propagation_gradient;
}

template< typename TInput, typename TLevelSetContainer, typename TPropagationImage >
typename LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >::LevelSetOutputRealType
LevelSetEquationPropagationTerm< TInput, TLevelSetContainer, TPropagationImage >
::Value( const LevelSetInputIndexType& iP,
         const LevelSetDataType& iData )
{
  const LevelSetOutputRealType zero = NumericTraits< LevelSetOutputRealType >::Zero;
  LevelSetOutputRealType propagation_gradient = zero;

  for ( unsigned int i = 0; i < ImageDimension; i++ )
    {
    propagation_gradient +=
      vnl_math_sqr( vnl_math_max( iData.BackwardGradient.m_Value[i], zero ) ) +
      vnl_math_sqr( vnl_math_min( iData.ForwardGradient.m_Value[i],  zero ) );
    }

  propagation_gradient *= this->PropagationSpeed( iP );

  return propagation_gradient;
}

}

#endif