This file is indexed.

/usr/include/ITK-4.5/itkMeshFileWriter.h is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkMeshFileWriter_h
#define __itkMeshFileWriter_h
#include "ITKIOMeshExport.h"

#include "itkProcessObject.h"
#include "itkMeshIOBase.h"
#include "itkExceptionObject.h"

namespace itk
{
/** \class MeshFileWriterException.
 * \brief Base exception class for IO problems during writing.
 *
 * \ingroup ITKIOMesh
 */
class ITKIOMesh_HIDDEN MeshFileWriterException:public ExceptionObject
{
public:
  /** Run-time information. */
  itkTypeMacro(MeshFileWriterException, ExceptionObject);

  /** Constructor. */
  MeshFileWriterException(const char *file, unsigned int line,
                          const char *message = "Error in IO",
                          const char *loc = "Unknown"):
    ExceptionObject(file, line, message, loc)
  {}

  /** Constructor. */
  MeshFileWriterException(const std::string & file, unsigned int line,
                          const char *message = "Error in IO",
                          const char *loc = "Unknown"):
    ExceptionObject(file, line, message, loc)
  {}
};

/** \class MeshFileWriter
 * \brief Writes mesh data to a single file.
 *
 * MeshFileWriter writes its input data to a single output file.
 * MeshFileWriter interfaces with an MeshIO class to write out the
 * data.
 *
 * A pluggable factory pattern is used that allows different kinds of writers
 * to be registered (even at run time) without having to modify the
 * code in this class. You can either manually instantiate the MeshIO
 * object and associate it with the MeshFileWriter, or let the class
 * figure it out from the extension. Normally just setting the filename
 * with a suitable suffix (".vtk", etc) and setting the input
 * to the writer is enough to get the writer to work properly.
 *
 * \author Wanlin Zhu. Uviversity of New South Wales, Australia.
 *
 * \sa MeshIOBase
 *
 * \ingroup IOFilters
 * \ingroup ITKIOMesh
 */
template< typename TInputMesh >
class ITKIOMesh_HIDDEN MeshFileWriter:public ProcessObject
{
public:
  /** Standard class typedefs. */
  typedef MeshFileWriter             Self;
  typedef ProcessObject              Superclass;
  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro(MeshFileWriter, ProcessObject);

  /** Some convenient typedefs. */
  typedef TInputMesh                         InputMeshType;
  typedef typename InputMeshType::Pointer    InputMeshPointer;
  typedef typename InputMeshType::RegionType InputMeshRegionType;
  typedef typename InputMeshType::PixelType  InputMeshPixelType;
  typedef typename InputMeshType::CellType   InputMeshCellType;
  typedef typename MeshIOBase::SizeValueType SizeValueType;

  /** Set/Get the mesh input of this writer.  */
  using Superclass::SetInput;
  void  SetInput(const InputMeshType *input);

  const InputMeshType * GetInput(void);

  const InputMeshType * GetInput(unsigned int idx);

  /** Specify the name of the output file to write. */
  itkSetStringMacro(FileName);
  itkGetStringMacro(FileName);

  /** Set/Get the MeshIO helper class. Usually this is created via the object
  * factory mechanism that determines whether a particular MeshIO can
  * write a certain file. This method provides a way to get the MeshIO
  * instance that is created, or one can be manually set where the
  * IO factory mechanism may not work (some mesh files with non-standard filename suffix's.
  * If the user specifies the MeshIO, we assume she makes the
  * correct choice and will allow a file to be created regardless of
  * the file extension. If the factory has set the MeshIO, the
  * extension must be supported by the specified MeshIO. */
  void SetMeshIO(MeshIOBase *io)
  {
    if ( this->m_MeshIO != io )
      {
      this->Modified();
      this->m_MeshIO = io;
      }
    m_FactorySpecifiedMeshIO = false;
    m_UserSpecifiedMeshIO = true;
  }
  itkGetModifiableObjectMacro(MeshIO, MeshIOBase);

  void SetFileTypeAsASCII(){m_FileTypeIsBINARY = false; }
  void SetFileTypeAsBINARY(){m_FileTypeIsBINARY = true; }

  /** A special version of the Update() method for writers.  It
  * invokes start and end events and handles releasing data. It
  * eventually calls GenerateData() which does the actual writing. */
  virtual void Write(void);

  /** Aliased to the Write() method to be consistent with the rest of the
  * pipeline. */
  virtual void Update()
  {
    this->Write();
  }

  /** Set the compression On or Off */
  itkSetMacro(UseCompression, bool);
  itkGetConstReferenceMacro(UseCompression, bool);
  itkBooleanMacro(UseCompression);

protected:
  MeshFileWriter();
  ~MeshFileWriter();
  void PrintSelf(std::ostream & os, Indent indent) const;

  template< typename Output >
  void CopyPointsToBuffer(Output *data);

  template< typename Output >
  void CopyCellsToBuffer(Output *data);

  template< typename Output >
  void CopyPointDataToBuffer(Output *data);

  template< typename Output >
  void CopyCellDataToBuffer(Output *data);

  void WritePoints();

  void WriteCells();

  void WritePointData();

  void WriteCellData();

private:
  MeshFileWriter(const Self &); // purposely not implemented
  void operator=(const Self &); // purposely not implemented

  std::string         m_FileName;
  MeshIOBase::Pointer m_MeshIO;
  bool                m_UserSpecifiedMeshIO;    // track whether the MeshIO is
                                                // user specified
  bool                m_FactorySpecifiedMeshIO; // track whether the factory
                                                // mechanism set the MeshIO
  bool                m_UseCompression;
  bool                m_FileTypeIsBINARY;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMeshFileWriter.hxx"
#endif

#endif // __itkMeshFileWriter_h