This file is indexed.

/usr/include/ITK-4.5/itkPoint.hxx is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkPoint_hxx
#define __itkPoint_hxx
#include "itkPoint.h"
#include "itkNumericTraitsPointPixel.h"
#include "vnl/vnl_math.h"
#include "itkObject.h"

namespace itk
{
/**
 * Assignment Operator
 */
template< typename T, unsigned int TPointDimension >
Point< T, TPointDimension > &
Point< T, TPointDimension >
::operator=(const Self & r)
{
  BaseArray::operator=(r);
  return *this;
}

/**
 * Assignment from a plain array
 */
template< typename T, unsigned int TPointDimension >
Point< T, TPointDimension > &
Point< T, TPointDimension >
::operator=(const ValueType r[TPointDimension])
{
  BaseArray::operator=(r);
  return *this;
}

/**
 * In place increment by a vector
 */
template< typename T, unsigned int TPointDimension >
const Point< T, TPointDimension > &
Point< T, TPointDimension >
::operator+=(const VectorType & vec)
{
  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    ( *this )[i] += vec[i];
    }
  return *this;
}

/**
 * In place subtract a vector
 */
template< typename T, unsigned int TPointDimension >
const Point< T, TPointDimension > &
Point< T, TPointDimension >
::operator-=(const VectorType & vec)
{
  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    ( *this )[i] -= vec[i];
    }
  return *this;
}

/*
 * Add operator with a vector
 */
template< typename T, unsigned int TPointDimension >
Point< T, TPointDimension >
Point< T, TPointDimension >
::operator+(const VectorType & vec) const
{
  Self result;

  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    result[i] = ( *this )[i] + vec[i];
    }
  return result;
}

/*
 * Subtract a vector, return a point
 */
template< typename T, unsigned int TPointDimension >
Point< T, TPointDimension >
Point< T, TPointDimension >
::operator-(const VectorType & vec)  const
{
  Self result;

  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    result[i] = ( *this )[i] - vec[i];
    }
  return result;
}

/*
 * Difference between two points
 */
template< typename T, unsigned int TPointDimension >
Vector< T, TPointDimension >
Point< T, TPointDimension >
::operator-(const Self & pnt)  const
{
  VectorType result;

  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    result[i] = ( *this )[i] - pnt[i];
    }
  return result;
}

/*
 * Return a vnl_vector_ref
 */
template< typename T, unsigned int TPointDimension >
vnl_vector_ref< T >
Point< T, TPointDimension >
::GetVnlVector(void)
{
  return vnl_vector_ref< T >( TPointDimension, this->GetDataPointer() );
}

/**
 * Return a vnl_vector const
 */
template< typename T, unsigned int TPointDimension >
vnl_vector< T >
Point< T, TPointDimension >
::GetVnlVector(void) const
{
  // Return a vector_ref<>.  This will be automatically converted to a
  // vnl_vector<>.  We have to use a const_cast<> which would normally
  // be prohibited in a const method, but it is safe to do here
  // because the cast to vnl_vector<> will ultimately copy the data.
  return vnl_vector_ref< T >( TPointDimension,
                              const_cast< T * >( this->GetDataPointer() ) );
}

template< typename T, unsigned int TPointDimension >
typename Point< T, TPointDimension >::VectorType
Point< T, TPointDimension >
::GetVectorFromOrigin() const
{
  // VectorType knows how to construct from ValueType*.
  return &( *this )[0];
}

/**
 * Set the point to the median point of the two arguments
 */
template< typename T, unsigned int TPointDimension >
void
Point< T, TPointDimension >
::SetToMidPoint(const Self & A, const Self & B)
{
  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    ( *this )[i] = ( A[i] + B[i] ) / 2.0;
    }
}

/**
 * Set the point to the barycentric combination of two points
 */
template< typename T, unsigned int TPointDimension >
void
Point< T, TPointDimension >
::SetToBarycentricCombination(const Self & A,
                              const Self & B,
                              double alpha)
{
  const double wa = alpha;
  const double wb = 1.0 - alpha;

  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    ( *this )[i] =  wa * A[i] + wb * B[i];
    }
}

/**
 * Set the point to the barycentric combination of three points
 */
template< typename T, unsigned int TPointDimension >
void
Point< T, TPointDimension >
::SetToBarycentricCombination(const Self & A,
                              const Self & B,
                              const Self & C,
                              double weightForA,
                              double weightForB)
{
  const double weightForC = 1.0 - weightForA - weightForB;

  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    ( *this )[i] =  weightForA * A[i] + weightForB * B[i] + weightForC * C[i];
    }
}

/**
 * Set the point to the barycentric combination of N points
 */
template< typename T, unsigned int TPointDimension >
void
Point< T, TPointDimension >
::SetToBarycentricCombination(const Self *P,
                              const double *weights, unsigned int N)
{
  this->Fill(NumericTraits< T >::Zero); // put this point to null
  double weightSum = 0.0;
  for ( unsigned int j = 0; j < N - 1; j++ )
    {
    const double weight = weights[j];
    weightSum += weight;
    for ( unsigned int i = 0; i < TPointDimension; i++ )
      {
      ( *this )[i] += weight * P[j][i];
      }
    }
  const double weight = ( 1.0 - weightSum );
  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    ( *this )[i] += weight * P[N - 1][i];
    }
}

/**
 * Set the point to the barycentric combination of N points in a Container
 */
template< typename TPointContainer, typename TWeightContainer >
typename BarycentricCombination< TPointContainer, TWeightContainer >
::PointType
BarycentricCombination< TPointContainer, TWeightContainer >
::Evaluate(
  const PointContainerPointer & points,
  const WeightContainerType & weights)
{
  typedef typename TPointContainer::Element PointType;
  typedef typename PointType::ValueType     ValueType;
  PointType barycentre;
  barycentre.Fill(NumericTraits< ValueType >::Zero);   // set to null

  typename TPointContainer::Iterator point = points->Begin();
  typename TPointContainer::Iterator final = points->End();
  typename TPointContainer::Iterator last  = final;
  --last; // move to the (N)th point

  double weightSum = 0.0;

  const unsigned int PointDimension = PointType::PointDimension;
  unsigned int       j = 0;

  while ( point != last )
    {
    const double weight = weights[j++];
    weightSum += weight;
    for ( unsigned int i = 0; i < PointDimension; i++ )
      {
      barycentre[i] += weight * ( point->Value() )[i];
      }
    ++point;
    }

  // Compute directly the last one
  // to make sure that the weights sum 1
  const double weight = ( 1.0 - weightSum );
  for ( unsigned int i = 0; i < PointDimension; i++ )
    {
    barycentre[i] += weight * ( last->Value() )[i];
    }

  return barycentre;
}

/**
 * Print content to an ostream
 */
template< typename T, unsigned int TPointDimension >
std::ostream &
operator<<(std::ostream & os, const Point< T, TPointDimension > & vct)
{
  os << "[";
  if ( TPointDimension == 1 )
    {
    os << vct[0];
    }
  else
    {
    for ( unsigned int i = 0; i + 1 < TPointDimension; i++ )
      {
      os <<  vct[i] << ", ";
      }
    os <<  vct[TPointDimension - 1];
    }
  os << "]";
  return os;
}

/**
 * Read content from an istream
 */
template< typename T, unsigned int TPointDimension >
std::istream &
operator>>(std::istream & is, Point< T, TPointDimension > & vct)
{
  for ( unsigned int i = 0; i < TPointDimension; i++ )
    {
    is >>  vct[i];
    }
  return is;
}

#if !defined(ITK_LEGACY_REMOVE)
/**
 * Return a vnl_vector_ref
 */
template< typename T, unsigned int TPointDimension >
vnl_vector_ref< T >
Point< T, TPointDimension >
::Get_vnl_vector(void)
{
  return vnl_vector_ref< T >( TPointDimension, this->GetDataPointer() );
}

/**
 * Return a vnl_vector const
 */
template< typename T, unsigned int TPointDimension >
vnl_vector< T >
Point< T, TPointDimension >
::Get_vnl_vector(void) const
{
  // Return a vector_ref<>.  This will be automatically converted to a
  // vnl_vector<>.  We have to use a const_cast<> which would normally
  // be prohibited in a const method, but it is safe to do here
  // because the cast to vnl_vector<> will ultimately copy the data.
  return vnl_vector_ref< T >( TPointDimension,
                              const_cast< T * >( this->GetDataPointer() ) );
}
#endif

} // end namespace itk

#endif