This file is indexed.

/usr/include/ITK-4.5/itkQuadraticTriangleCell.hxx is in libinsighttoolkit4-dev 4.5.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkQuadraticTriangleCell_hxx
#define __itkQuadraticTriangleCell_hxx
#include "itkQuadraticTriangleCell.h"

namespace itk
{
/**
 * Standard CellInterface:
 */
template< typename TCellInterface >
void
QuadraticTriangleCell< TCellInterface >
::MakeCopy(CellAutoPointer & cellPointer) const
{
  cellPointer.TakeOwnership(new Self);
  cellPointer->SetPointIds( this->GetPointIds() );
}

/**
 * Standard CellInterface:
 * Get the topological dimension of this cell.
 */
template< typename TCellInterface >
unsigned int
QuadraticTriangleCell< TCellInterface >
::GetDimension(void) const
{
  return Self::CellDimension;
}

/**
 * Standard CellInterface:
 * Get the number of points required to define the cell.
 */
template< typename TCellInterface >
unsigned int
QuadraticTriangleCell< TCellInterface >
::GetNumberOfPoints(void) const
{
  return Self::NumberOfPoints;
}

/**
 * Standard CellInterface:
 * Get the number of boundary features of the given dimension.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::CellFeatureCount
QuadraticTriangleCell< TCellInterface >
::GetNumberOfBoundaryFeatures(int dimension) const
{
  switch ( dimension )
    {
    case 0:
      return GetNumberOfVertices();
    case 1:
      return GetNumberOfEdges();
    default:
      return 0;
    }
}

/**
 * Standard CellInterface:
 * Get the boundary feature of the given dimension specified by the given
 * cell feature Id.
 * The Id can range from 0 to GetNumberOfBoundaryFeatures(dimension)-1.
 */
template< typename TCellInterface >
bool
QuadraticTriangleCell< TCellInterface >
::GetBoundaryFeature(int dimension, CellFeatureIdentifier featureId,
                     CellAutoPointer & cellPointer)
{
  switch ( dimension )
    {
    case 0:
      {
      VertexAutoPointer vertexPointer;
      if ( this->GetVertex(featureId, vertexPointer) )
        {
        TransferAutoPointer(cellPointer, vertexPointer);
        return true;
        }
      break;
      }
    case 1:
      {
      EdgeAutoPointer edgePointer;
      if ( this->GetEdge(featureId, edgePointer) )
        {
        TransferAutoPointer(cellPointer, edgePointer);
        return true;
        }
      break;
      }
    default:
      break; // just fall through
    }
  cellPointer.Reset();
  return false;
}

/**
 * Standard CellInterface:
 * Set the point id list used by the cell.  It is assumed that the given
 * iterator can be incremented and safely de-referenced enough times to
 * get all the point ids needed by the cell.
 */
template< typename TCellInterface >
void
QuadraticTriangleCell< TCellInterface >
::SetPointIds(PointIdConstIterator first)
{
  PointIdConstIterator ii(first);

  for ( unsigned int i = 0; i < Self::NumberOfPoints; ++i )
    {
    m_PointIds[i] = *ii++;
    }
}

/**
 * Standard CellInterface:
 * Set the point id list used by the cell.  It is assumed that the range
 * of iterators [first, last) contains the correct number of points needed to
 * define the cell.  The position *last is NOT referenced, so it can safely
 * be one beyond the end of an array or other container.
 */
template< typename TCellInterface >
void
QuadraticTriangleCell< TCellInterface >
::SetPointIds(PointIdConstIterator first, PointIdConstIterator last)
{
  int                  localId = 0;
  PointIdConstIterator ii(first);

  while ( ii != last )
    {
    m_PointIds[localId++] = *ii++;
    }
}

/**
 * Standard CellInterface:
 * Set an individual point identifier in the cell.
 */
template< typename TCellInterface >
void
QuadraticTriangleCell< TCellInterface >
::SetPointId(int localId, PointIdentifier ptId)
{
  m_PointIds[localId] = ptId;
}

/**
 * Standard CellInterface:
 * Get a begin iterator to the list of point identifiers used by the cell.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::PointIdIterator
QuadraticTriangleCell< TCellInterface >
::PointIdsBegin(void)
{
  return &m_PointIds[0];
}

/**
 * Standard CellInterface:
 * Get a const begin iterator to the list of point identifiers used
 * by the cell.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::PointIdConstIterator
QuadraticTriangleCell< TCellInterface >
::PointIdsBegin(void) const
{
  return &m_PointIds[0];
}

/**
 * Standard CellInterface:
 * Get an end iterator to the list of point identifiers used by the cell.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::PointIdIterator
QuadraticTriangleCell< TCellInterface >
::PointIdsEnd(void)
{
  return &m_PointIds[Self::NumberOfPoints - 1] + 1;
}

/**
 * Standard CellInterface:
 * Get a const end iterator to the list of point identifiers used
 * by the cell.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::PointIdConstIterator
QuadraticTriangleCell< TCellInterface >
::PointIdsEnd(void) const
{
  return &m_PointIds[Self::NumberOfPoints - 1] + 1;
}

/**
 * Triangle-specific:
 * Get the number of vertices defining the triangle.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::CellFeatureCount
QuadraticTriangleCell< TCellInterface >
::GetNumberOfVertices(void) const
{
  return Self::NumberOfVertices;
}

/**
 * Triangle-specific:
 * Get the number of edges defined for the triangle.
 */
template< typename TCellInterface >
typename QuadraticTriangleCell< TCellInterface >::CellFeatureCount
QuadraticTriangleCell< TCellInterface >
::GetNumberOfEdges(void) const
{
  return Self::NumberOfEdges;
}

/**
 * Triangle-specific:
 * Get the vertex specified by the given cell feature Id.
 * The Id can range from 0 to GetNumberOfVertices()-1.
 */
template< typename TCellInterface >
bool
QuadraticTriangleCell< TCellInterface >
::GetVertex(CellFeatureIdentifier vertexId, VertexAutoPointer & vertexPointer)
{
  VertexType *vert = new VertexType;

  vert->SetPointId(0, m_PointIds[vertexId]);
  vertexPointer.TakeOwnership(vert);
  return true;
}

/**
 * Triangle-specific:
 * Get the edge specified by the given cell feature Id.
 * The Id can range from 0 to GetNumberOfEdges()-1.
 */
template< typename TCellInterface >
bool
QuadraticTriangleCell< TCellInterface >
::GetEdge(CellFeatureIdentifier edgeId, EdgeAutoPointer & edgePointer)
{
  EdgeType *edge = new EdgeType;

  for ( unsigned int i = 0; i < EdgeType::NumberOfPoints; ++i )
    {
    edge->SetPointId(i, m_PointIds[m_Edges[edgeId][i]]);
    }
  edgePointer.TakeOwnership(edge);
  return true;
}

/** Given the parametric coordinates of a point in the cell
 *  determine the value of its Shape Functions
 *  returned through an itkArray<InterpolationWeightType>).  */
template< typename TCellInterface >
void
QuadraticTriangleCell< TCellInterface >
::EvaluateShapeFunctions(
  const ParametricCoordArrayType & parametricCoordinates,
  ShapeFunctionsArrayType  & weights) const
{
  if ( parametricCoordinates.size() != 3 )
    {
    itkGenericExceptionMacro(<< "QuadraticTriangleCell expect three coordinates");
    }

  const double L1 = parametricCoordinates[0];
  const double L2 = parametricCoordinates[1];
  const double L3 = parametricCoordinates[2];

  weights = ShapeFunctionsArrayType(6);

  weights[0] = L1 * ( 2.0 * L1 - 1.0 );
  weights[1] = L2 * ( 2.0 * L2 - 1.0 );
  weights[2] = L3 * ( 2.0 * L3 - 1.0 );
  weights[3] = 4.0 * L1 * L3;
  weights[4] = 4.0 * L1 * L2;
  weights[5] = 4.0 * L2 * L3;
}
} // end namespace itk

#endif